KEGG   PATHWAY: ptha03430
Entry
ptha03430                   Pathway                                
Name
Mismatch repair - Providencia stuartii 2017-45-35
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ptha03430  Mismatch repair
ptha03430

Other DBs
GO: 0006298
Organism
Providencia stuartii 2017-45-35 [GN:ptha]
Gene
OI982_18250  mutS; DNA mismatch repair protein MutS [KO:K03555]
OI982_11250  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
OI982_19480  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
OI982_11380  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
OI982_17625  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
OI982_00260  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
OI982_01220  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
OI982_16635  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
OI982_19890  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
OI982_22510  ssb; single-stranded DNA-binding protein [KO:K03111]
OI982_08165  ssb; single-stranded DNA-binding protein [KO:K03111]
OI982_08555  ssb; single-stranded DNA-binding protein [KO:K03111]
OI982_15225  single-stranded DNA-binding protein [KO:K03111]
OI982_15940  ssb; single-stranded DNA-binding protein [KO:K03111]
OI982_07685  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
OI982_12700  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
OI982_18830  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
OI982_07405  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
OI982_00355  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
OI982_19295  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
OI982_15755  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
OI982_16825  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
OI982_21460  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
OI982_00820  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
OI982_01415  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
OI982_10655  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
OI982_15660  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
OI982_20485  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
OI982_14065  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
OI982_00560  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
OI982_13105  dam; adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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