KEGG   PATHWAY: ptkz00020
Entry
ptkz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Purpureocillium takamizusanense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptkz00020  Citrate cycle (TCA cycle)
ptkz00020

Module
ptkz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptkz00020]
ptkz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptkz00020]
ptkz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptkz00020]
ptkz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptkz00020]
ptkz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptkz00020]
Other DBs
GO: 0006099
Organism
Purpureocillium takamizusanense [GN:ptkz]
Gene
JDV02_000309  CIT3; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JDV02_006438  CIT1; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JDV02_006053  acl1; ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
JDV02_006054  acl2; ATP citrate synthase [KO:K01648] [EC:2.3.3.8]
JDV02_003654  ACO1; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JDV02_007208  IDP2; Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
JDV02_007847  IDH2; Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
JDV02_003384  IDH1; Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
JDV02_009508  Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
JDV02_002673  KGD1; Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
JDV02_009509  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JDV02_003671  KGD2; Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JDV02_003690  LPD1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JDV02_010740  uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
JDV02_004228  LSC1; ligase of succinyl-coa [KO:K01899] [EC:6.2.1.4 6.2.1.5]
JDV02_003037  uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
JDV02_005938  LSC2; succinate--CoA ligase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
JDV02_001148  SDH1; Succinate dehydrogenase (quinone) [KO:K00234] [EC:1.3.5.1]
JDV02_010784  SDH2; Succinate dehydrogenase (quinone) [KO:K00235] [EC:1.3.5.1]
JDV02_005776  SDH3; cytochrome b subunit of succinate dehydrogenase, Sdh3p [KO:K00236]
JDV02_009193  SDH4; membrane anchor subunit of succinate dehydrogenase, Sdh4 [KO:K00237]
JDV02_009961  FUM1; Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JDV02_002374  MDH1; Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
JDV02_002732  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
JDV02_001212  PYC1; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JDV02_008564  PCK1; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JDV02_007493  PDA1; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
JDV02_008249  PDB1; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
JDV02_006520  LAT1; Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptkz00010  Glycolysis / Gluconeogenesis
ptkz00053  Ascorbate and aldarate metabolism
ptkz00061  Fatty acid biosynthesis
ptkz00062  Fatty acid elongation
ptkz00071  Fatty acid degradation
ptkz00190  Oxidative phosphorylation
ptkz00220  Arginine biosynthesis
ptkz00250  Alanine, aspartate and glutamate metabolism
ptkz00280  Valine, leucine and isoleucine degradation
ptkz00350  Tyrosine metabolism
ptkz00470  D-Amino acid metabolism
ptkz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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