KEGG   PATHWAY: puk00030
Entry
puk00030                    Pathway                                
Name
Pentose phosphate pathway - Pullulanibacillus sp. KACC 23026
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
puk00030  Pentose phosphate pathway
puk00030

Module
puk_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:puk00030]
puk_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:puk00030]
puk_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:puk00030]
puk_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:puk00030]
puk_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:puk00030]
puk_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:puk00030]
puk_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:puk00030]
Other DBs
GO: 0006098
Organism
Pullulanibacillus sp. KACC 23026 [GN:puk]
Gene
PU629_12270  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PU629_03085  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
PU629_11845  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PU629_12290  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PU629_09800  lactonase family protein [KO:K07404] [EC:3.1.1.31]
PU629_01015  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PU629_12280  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PU629_12575  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PU629_12285  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PU629_17285  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PU629_12275  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
PU629_17280  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
PU629_18010  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
PU629_02805  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
PU629_20515  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
PU629_11120  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
PU629_11395  orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
PU629_11125  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
PU629_11400  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
PU629_07640  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PU629_12680  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PU629_02885  ribokinase [KO:K00852] [EC:2.7.1.15]
PU629_14940  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
PU629_18835  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
PU629_13235  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
PU629_22145  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
PU629_02815  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PU629_03090  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PU629_04775  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PU629_17350  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PU629_13670  KDGP aldolase [KO:K17463] [EC:4.1.2.14]
PU629_17070  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PU629_17740  gntK; gluconokinase [KO:K25031] [EC:2.7.1.12]
PU629_02810  sugar kinase [KO:K00874] [EC:2.7.1.45]
PU629_04780  sugar kinase [KO:K00874] [EC:2.7.1.45]
PU629_11380  sugar kinase [KO:K00874] [EC:2.7.1.45]
PU629_17355  sugar kinase [KO:K00874] [EC:2.7.1.45]
PU629_13675  DgaE family pyridoxal phosphate-dependent ammonia lyase [KO:K17468] [EC:4.3.1.29]
PU629_10125  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
PU629_01665  fba; class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
PU629_20510  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
PU629_14025  fructose-1,6-bisphosphatase [KO:K04041] [EC:3.1.3.11]
PU629_05915  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
puk00010  Glycolysis / Gluconeogenesis
puk00040  Pentose and glucuronate interconversions
puk00052  Galactose metabolism
puk00230  Purine metabolism
puk00240  Pyrimidine metabolism
puk00340  Histidine metabolism
puk00630  Glyoxylate and dicarboxylate metabolism
puk00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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