KEGG   PATHWAY: pvc00240
Entry
pvc00240                    Pathway                                
Name
Pyrimidine metabolism - Providencia vermicola
Class
Metabolism; Nucleotide metabolism
Pathway map
pvc00240  Pyrimidine metabolism
pvc00240

Module
pvc_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:pvc00240]
pvc_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:pvc00240]
pvc_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pvc00240]
pvc_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:pvc00240]
Other DBs
GO: 0006220 0006213
Organism
Providencia vermicola [GN:pvc]
Gene
G3341_03225  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
G3341_03220  carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
G3341_17580  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
G3341_17585  aspartate carbamoyltransferase regulatory subunit [KO:K00610]
G3341_13295  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
G3341_16385  amidohydrolase/deacetylase family metallohydrolase [KO:K01465] [EC:3.5.2.3]
G3341_14045  pyrD; quinone-dependent dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
G3341_19285  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
G3341_10060  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
G3341_15590  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
G3341_07360  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
G3341_05170  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
G3341_16635  septum formation inhibitor Maf [KO:K06287] [EC:3.6.1.-]
G3341_05180  pyrG; CTP synthase (glutamine hydrolyzing) [KO:K01937] [EC:6.3.4.2]
G3341_14160  cmk; (d)CMP kinase [KO:K00945] [EC:2.7.4.25]
G3341_14560  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
G3341_05295  bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
G3341_04635  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
G3341_02765  nucleoside hydrolase [KO:K25589] [EC:3.2.2.2 3.2.2.3]
G3341_02585  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
G3341_09330  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
G3341_03295  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
G3341_15655  DUF3412 domain-containing protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
G3341_10610  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
G3341_14595  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
G3341_17600  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
G3341_14555  dcd; dCTP deaminase [KO:K01494] [EC:3.5.4.13]
G3341_08240  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
G3341_15335  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
G3341_08235  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
G3341_15340  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
G3341_08085  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
G3341_08950  dTMP kinase [KO:K00943] [EC:2.7.4.9]
G3341_19275  dut; dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
G3341_02980  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
G3341_09835  thymidine kinase [KO:K00857] [EC:2.7.1.21]
G3341_15770  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
G3341_10190  ydfG; bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
pvc00030  Pentose phosphate pathway
pvc00220  Arginine biosynthesis
pvc00250  Alanine, aspartate and glutamate metabolism
pvc00280  Valine, leucine and isoleucine degradation
pvc00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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