KEGG   PATHWAY: pvul00020
Entry
pvul00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Patella vulgata (common limpet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvul00020  Citrate cycle (TCA cycle)
pvul00020

Module
pvul_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pvul00020]
pvul_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvul00020]
pvul_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvul00020]
Other DBs
GO: 0006099
Organism
Patella vulgata (common limpet) [GN:pvul]
Gene
126831882  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
126807856  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
126817301  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
126810619  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
126824442  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
126824558  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
126819667  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
126808827  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126826658  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126821174  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
126828771  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
126815940  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126820069  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126809861  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126813526  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
126826835  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
126829858  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
126817019  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
126827319  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
126822206  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
126821188  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
126825160  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
126820813  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
126815187  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
126815188  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
126810843  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
126828222  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
126823609  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvul00010  Glycolysis / Gluconeogenesis
pvul00053  Ascorbate and aldarate metabolism
pvul00061  Fatty acid biosynthesis
pvul00062  Fatty acid elongation
pvul00071  Fatty acid degradation
pvul00190  Oxidative phosphorylation
pvul00220  Arginine biosynthesis
pvul00250  Alanine, aspartate and glutamate metabolism
pvul00280  Valine, leucine and isoleucine degradation
pvul00350  Tyrosine metabolism
pvul00470  D-Amino acid metabolism
pvul00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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