KEGG   PATHWAY: pvy00030
Entry
pvy00030                    Pathway                                
Name
Pentose phosphate pathway - Pistacia vera (pistachio)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvy00030  Pentose phosphate pathway
pvy00030

Module
pvy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pvy00030]
pvy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pvy00030]
pvy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pvy00030]
pvy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pvy00030]
Other DBs
GO: 0006098
Organism
Pistacia vera (pistachio) [GN:pvy]
Gene
116119406  glucose-6-phosphate isomerase, cytosolic 2B [KO:K01810] [EC:5.3.1.9]
116123129  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
116139780  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116141948  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116131264  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116123099  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116123122  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116110366  inactive glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
116131548  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
116116536  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
116132899  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
116137731  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
116139902  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
116145343  6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
116122643  LOW QUALITY PROTEIN: 6-phosphogluconate dehydrogenase, decarboxylating 1-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
116122645  LOW QUALITY PROTEIN: 6-phosphogluconate dehydrogenase, decarboxylating 1-like [KO:K00033] [EC:1.1.1.44 1.1.1.343]
116139636  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
116110308  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
116115349  transketolase, chloroplastic-like [KO:K00615] [EC:2.2.1.1]
116128071  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
116144589  uncharacterized protein LOC116144589 [KO:K00616] [EC:2.2.1.2]
116119391  uncharacterized protein LOC116119391 [KO:K00616] [EC:2.2.1.2]
116125173  uncharacterized protein LOC116125173 [KO:K00616] [EC:2.2.1.2]
116133819  probable ribose-5-phosphate isomerase 4, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
116143947  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
116119169  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
116106758  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
116140330  ribokinase-like [KO:K00852] [EC:2.7.1.15]
116130852  ribokinase-like [KO:K00852] [EC:2.7.1.15]
116130053  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
116121825  phosphoglucomutase, chloroplastic isoform X1 [KO:K01835] [EC:5.4.2.2]
116138409  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
116117997  ribose-phosphate pyrophosphokinase 1-like isoform X1 [KO:K00948] [EC:2.7.6.1]
116104970  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
116138116  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like [KO:K00131] [EC:1.2.1.9]
116124763  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
116112296  gluconokinase [KO:K00851] [EC:2.7.1.12]
116133944  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
116130096  fructose-bisphosphate aldolase 1, chloroplastic-like [KO:K01623] [EC:4.1.2.13]
116132314  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
116124014  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
116111853  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
116142760  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
116143386  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
116133698  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
116146183  ATP-dependent 6-phosphofructokinase 4, chloroplastic-like isoform X1 [KO:K00850] [EC:2.7.1.11]
116146213  ATP-dependent 6-phosphofructokinase 4, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
116142381  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
116144100  ATP-dependent 6-phosphofructokinase 5, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
116133623  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
116105026  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
116105048  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
116121257  ATP-dependent 6-phosphofructokinase 3-like isoform X1 [KO:K00850] [EC:2.7.1.11]
116125285  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
116125313  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
116126160  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
116134789  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
116137906  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like [KO:K00895] [EC:2.7.1.90]
116128649  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pvy00010  Glycolysis / Gluconeogenesis
pvy00040  Pentose and glucuronate interconversions
pvy00052  Galactose metabolism
pvy00230  Purine metabolism
pvy00240  Pyrimidine metabolism
pvy00340  Histidine metabolism
pvy00630  Glyoxylate and dicarboxylate metabolism
pvy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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