PATHWAY: pvz00470
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Entry
pvz00470 Pathway
Name
D-Amino acid metabolism - Pectobacterium versatile
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
pvz00470
D-Amino acid metabolism
Ortholog table
Other DBs
GO:
0046416
Organism
Pectobacterium versatile [GN:
pvz
]
Gene
OA04_37520
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
OA04_31180
dat_2; D-alanine aminotransferase [KO:
K00824
] [EC:
2.6.1.21
]
OA04_38560
ddlB; D-alanine--D-alanine ligase B [KO:
K01921
] [EC:
6.3.2.4
]
OA04_31240
dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [KO:
K03367
] [EC:
6.1.1.13
]
OA04_31230
dltC; acyl carrier protein [KO:
K14188
] [EC:
6.1.1.13
]
OA04_13460
aspartate/glutamate racemase [KO:
K25316
] [EC:
5.1.1.10
]
OA04_43220
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
OA04_38600
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [KO:
K01925
] [EC:
6.3.2.9
]
OA04_01580
mandelate racemase/muconate lactonizing family protein [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
OA04_31170
mandelate racemase/muconate lactonizing protein [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
OA04_16770
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
OA04_28760
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
OA04_29030
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
OA04_42390
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
OA04_37400
lysA; Diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
OA04_41660
lysine/ornithine decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
OA04_23050
dadA; D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
pvz00010
Glycolysis / Gluconeogenesis
pvz00020
Citrate cycle (TCA cycle)
pvz00250
Alanine, aspartate and glutamate metabolism
pvz00260
Glycine, serine and threonine metabolism
pvz00270
Cysteine and methionine metabolism
pvz00300
Lysine biosynthesis
pvz00310
Lysine degradation
pvz00330
Arginine and proline metabolism
pvz00340
Histidine metabolism
pvz00360
Phenylalanine metabolism
pvz00550
Peptidoglycan biosynthesis
pvz00620
Pyruvate metabolism
KO pathway
ko00470
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