KEGG   PATHWAY: pwu00630
Entry
pwu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Polynucleobacter wuianus
Class
Metabolism; Carbohydrate metabolism
Pathway map
pwu00630  Glyoxylate and dicarboxylate metabolism
pwu00630

Module
pwu_M00012  Glyoxylate cycle [PATH:pwu00630]
Other DBs
GO: 0046487 0043648
Organism
Polynucleobacter wuianus [GN:pwu]
Gene
A8O14_02280  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
A8O14_06425  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
A8O14_03990  malate synthase G [KO:K01638] [EC:2.3.3.9]
A8O14_04285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A8O14_04320  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A8O14_05325  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A8O14_02305  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A8O14_05405  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
A8O14_05420  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
A8O14_05475  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
A8O14_05480  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
A8O14_05490  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
A8O14_09885  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
A8O14_09890  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
A8O14_09895  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
A8O14_01950  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
A8O14_01985  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
A8O14_07430  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
A8O14_01490  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
A8O14_04155  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8O14_04610  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8O14_00135  glycine cleavage system protein H [KO:K02437]
A8O14_05245  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
A8O14_05240  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
A8O14_10555  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
A8O14_02410  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
A8O14_02415  fumarate hydrolyase [KO:K03780] [EC:4.2.1.32]
A8O14_03665  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
A8O14_04835  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
A8O14_03125  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
A8O14_06265  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
A8O14_06270  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
A8O14_03130  formate dehydrogenase [KO:K00124]
A8O14_03140  formate dehydrogenase subunit gamma [KO:K00127]
A8O14_06480  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
A8O14_07255  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
A8O14_07240  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
A8O14_07250  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pwu00010  Glycolysis / Gluconeogenesis
pwu00020  Citrate cycle (TCA cycle)
pwu00030  Pentose phosphate pathway
pwu00053  Ascorbate and aldarate metabolism
pwu00071  Fatty acid degradation
pwu00230  Purine metabolism
pwu00250  Alanine, aspartate and glutamate metabolism
pwu00260  Glycine, serine and threonine metabolism
pwu00620  Pyruvate metabolism
pwu00710  Carbon fixation by Calvin cycle
pwu00750  Vitamin B6 metabolism
pwu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system