KEGG   PATHWAY: qlo00630
Entry
qlo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Quercus lobata (valley oak)
Class
Metabolism; Carbohydrate metabolism
Pathway map
qlo00630  Glyoxylate and dicarboxylate metabolism
qlo00630

Module
qlo_M00012  Glyoxylate cycle [PATH:qlo00630]
qlo_M00621  Glycine cleavage system [PATH:qlo00630]
Other DBs
GO: 0046487 0043648
Organism
Quercus lobata (valley oak) [GN:qlo]
Gene
115957859  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
115958397  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
115976307  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
115971601  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
115962807  malate synthase, glyoxysomal isoform X1 [KO:K01638] [EC:2.3.3.9]
115963840  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
115994633  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
115986563  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986564  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986565  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986569  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115971289  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115971290  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115992354  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115995496  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
115963820  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
115968387  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
115956030  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
115987417  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115988021  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115955924  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
115994392  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
115954552  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
115957267  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
115987262  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
115992125  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
115986465  peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [KO:K11517] [EC:1.1.3.15]
115988888  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
115988890  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
115991847  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
115991974  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
115991975  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
115959305  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like isoform X1 [KO:K11517] [EC:1.1.3.15]
115992838  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
115992839  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
115974638  catalase isozyme 3-like isoform X1 [KO:K03781] [EC:1.11.1.6]
115974639  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
115969912  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115954769  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115972570  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115990233  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115992096  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115992373  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115958439  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
115988315  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
115988359  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
115991908  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
115968603  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
115988668  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
115991917  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
115962089  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
115975822  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
115981618  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
115982489  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
115952760  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
115994410  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
115962785  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
115975984  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
115994277  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
115994463  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
115977495  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
115965245  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
115971218  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
115971481  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
115971812  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
115976122  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
115970851  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
115977525  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
115992035  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
115994747  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
115994938  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
115967241  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
115967243  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
115968182  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
115968550  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
115983677  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
115971758  glycine cleavage system H protein, mitochondrial [KO:K02437]
115971804  glycine cleavage system H protein, mitochondrial [KO:K02437]
115992220  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
115976672  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
115972643  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
115962208  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
115971557  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
qlo00010  Glycolysis / Gluconeogenesis
qlo00020  Citrate cycle (TCA cycle)
qlo00030  Pentose phosphate pathway
qlo00053  Ascorbate and aldarate metabolism
qlo00071  Fatty acid degradation
qlo00230  Purine metabolism
qlo00250  Alanine, aspartate and glutamate metabolism
qlo00260  Glycine, serine and threonine metabolism
qlo00620  Pyruvate metabolism
qlo00710  Carbon fixation by Calvin cycle
qlo00750  Vitamin B6 metabolism
qlo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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