KEGG   PATHWAY: qlo00020
Entry
qlo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Quercus lobata (valley oak)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
qlo00020  Citrate cycle (TCA cycle)
qlo00020

Module
qlo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:qlo00020]
qlo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:qlo00020]
qlo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:qlo00020]
Other DBs
GO: 0006099
Organism
Quercus lobata (valley oak) [GN:qlo]
Gene
115987417  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115988021  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
115955924  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
115994622  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
115962124  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
115981611  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
115982521  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
115994392  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
115954552  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
115957267  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
115976624  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115984274  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
115984341  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
115976027  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115976028  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
115967574  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
115950810  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
115950963  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
115953250  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
115973402  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
115953765  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
115955350  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
115965297  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
115954658  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
115957357  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
115992290  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
115994747  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
115994938  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
115963619  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
115959712  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
115994452  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
115976533  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
115971936  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
115994633  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
115986563  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986564  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986565  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
115986569  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115971289  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115971290  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115992354  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
115995496  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
115963820  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
115968387  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
115956030  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
115994354  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
115971486  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
115978658  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
115955975  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
115963466  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
115965512  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
115982109  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
115991501  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
115986582  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
115990600  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
115991822  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
115975413  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
qlo00010  Glycolysis / Gluconeogenesis
qlo00053  Ascorbate and aldarate metabolism
qlo00061  Fatty acid biosynthesis
qlo00062  Fatty acid elongation
qlo00071  Fatty acid degradation
qlo00190  Oxidative phosphorylation
qlo00220  Arginine biosynthesis
qlo00250  Alanine, aspartate and glutamate metabolism
qlo00280  Valine, leucine and isoleucine degradation
qlo00350  Tyrosine metabolism
qlo00470  D-Amino acid metabolism
qlo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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