KEGG   PATHWAY: rbar00020
Entry
rbar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodothermaceae bacterium RA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rbar00020  Citrate cycle (TCA cycle)
rbar00020

Module
rbar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rbar00020]
rbar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rbar00020]
rbar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rbar00020]
rbar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rbar00020]
rbar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rbar00020]
Other DBs
GO: 0006099
Organism
Rhodothermaceae bacterium RA [GN:rbar]
Gene
AWN76_011245  citrate synthase [KO:K01647] [EC:2.3.3.1]
AWN76_014835  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWN76_018190  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWN76_006920  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWN76_004770  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWN76_006135  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AWN76_009950  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AWN76_004595  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN76_014900  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWN76_009515  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWN76_004295  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWN76_011260  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AWN76_011265  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AWN76_011250  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AWN76_011255  succinate dehydrogenase [KO:K00242]
AWN76_003860  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AWN76_004160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWN76_002310  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AWN76_006900  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AWN76_006895  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AWN76_006890  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AWN76_008605  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
AWN76_001060  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rbar00010  Glycolysis / Gluconeogenesis
rbar00053  Ascorbate and aldarate metabolism
rbar00061  Fatty acid biosynthesis
rbar00071  Fatty acid degradation
rbar00190  Oxidative phosphorylation
rbar00220  Arginine biosynthesis
rbar00250  Alanine, aspartate and glutamate metabolism
rbar00280  Valine, leucine and isoleucine degradation
rbar00350  Tyrosine metabolism
rbar00470  D-Amino acid metabolism
rbar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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