KEGG   PATHWAY: rbi03430
Entry
rbi03430                    Pathway                                
Name
Mismatch repair - Robiginitalea biformata
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
rbi03430  Mismatch repair
rbi03430

Other DBs
GO: 0006298
Organism
Robiginitalea biformata [GN:rbi]
Gene
RB2501_03380  DNA mismatch repair protein [KO:K03555]
RB2501_14659  DNA mismatch repair protein MutS [KO:K07456]
RB2501_01660  putative DNA mismatch repair protein [KO:K03572]
RB2501_14494  putative helicase [KO:K03657] [EC:5.6.2.4]
RB2501_07435  putative single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
RB2501_05180  Single-strand binding protein [KO:K03111]
RB2501_08075  single-strand DNA-binding protein [KO:K03111]
RB2501_04555  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
RB2501_04255  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
RB2501_13564  DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
RB2501_13904  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
RB2501_12849  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
RB2501_14524  hypothetical protein [KO:K02340] [EC:2.7.7.7]
RB2501_06795  putative DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
RB2501_01875  putative DNA polymerase III epsilon chain [KO:K02342] [EC:2.7.7.7]
RB2501_13604  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
RB2501_15959  hypothetical protein [KO:K02342] [EC:2.7.7.7]
RB2501_10252  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
RB2501_16059  DNA ligase [KO:K01972] [EC:6.5.1.2]
RB2501_04280  DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
RB2501_01400  putative methyltransferase [KO:K06223] [EC:2.1.1.72]
RB2501_14054  phage DNA methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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