KEGG   PATHWAY: rbk00970
Entry
rbk00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Rhodopseudomonas boonkerdii
Class
Genetic Information Processing; Translation
Pathway map
rbk00970  Aminoacyl-tRNA biosynthesis
rbk00970

Organism
Rhodopseudomonas boonkerdii [GN:rbk]
Gene
E0H22_01795  tRNA-Ala [KO:K14218]
E0H22_02145  tRNA-Ala [KO:K14218]
E0H22_23610  tRNA-Ala [KO:K14218]
E0H22_22880  tRNA-Arg [KO:K14219]
E0H22_24835  tRNA-Arg [KO:K14219]
E0H22_04925  tRNA-Arg [KO:K14219]
E0H22_16065  tRNA-Arg [KO:K14219]
E0H22_13730  tRNA-Asn [KO:K14220]
E0H22_12685  tRNA-Asp [KO:K14221]
E0H22_11270  tRNA-Gln [KO:K14223]
E0H22_19570  tRNA-Gln [KO:K14223]
E0H22_19140  tRNA-Glu [KO:K14224]
E0H22_13360  tRNA-Glu [KO:K14224]
E0H22_01180  tRNA-Gly [KO:K14225]
E0H22_03250  tRNA-Gly [KO:K14225]
E0H22_17020  tRNA-Gly [KO:K14225]
E0H22_21600  tRNA-His [KO:K14226]
E0H22_23615  tRNA-Ile [KO:K14227]
E0H22_05380  tRNA-Leu [KO:K14228]
E0H22_01640  tRNA-Leu [KO:K14228]
E0H22_11480  tRNA-Leu [KO:K14228]
E0H22_12630  tRNA-Leu [KO:K14228]
E0H22_09090  tRNA-Lys [KO:K14229]
E0H22_23545  tRNA-Met [KO:K14230]
E0H22_07995  tRNA-Met [KO:K14230]
E0H22_19645  tRNA-Met [KO:K14230]
E0H22_03625  tRNA-Phe [KO:K14231]
E0H22_20140  tRNA-Pro [KO:K14232]
E0H22_12505  tRNA-Pro [KO:K14232]
E0H22_13460  tRNA-Pro [KO:K14232]
E0H22_24610  tRNA-Ser [KO:K14233]
E0H22_14070  tRNA-Ser [KO:K14233]
E0H22_02235  tRNA-Ser [KO:K14233]
E0H22_01035  tRNA-Thr [KO:K14234]
E0H22_03565  tRNA-Thr [KO:K14234]
E0H22_17225  tRNA-Thr [KO:K14234]
E0H22_17195  tRNA-Tyr [KO:K14236]
E0H22_07870  tRNA-Val [KO:K14237]
E0H22_05775  tRNA-Val [KO:K14237]
E0H22_12660  tRNA-Val [KO:K14237]
E0H22_12910  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
E0H22_23510  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E0H22_16250  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E0H22_17565  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E0H22_18100  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E0H22_19705  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
E0H22_16220  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
E0H22_16260  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
E0H22_12915  glutamine--tRNA ligase/YqeY domain fusion protein [KO:K01886] [EC:6.1.1.18]
E0H22_09920  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
E0H22_12380  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
E0H22_06020  glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
E0H22_06025  glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
E0H22_17315  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
E0H22_14850  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
E0H22_11150  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
E0H22_13910  methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
E0H22_14465  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
E0H22_22955  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
E0H22_13755  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
E0H22_01275  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
E0H22_06625  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
E0H22_03135  lysine--tRNA ligase [KO:K04566] [EC:6.1.1.6]
E0H22_14895  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
E0H22_12805  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
E0H22_06685  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
E0H22_01540  phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
E0H22_01535  phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
E0H22_15020  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
E0H22_00375  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
rbk00250  Alanine, aspartate and glutamate metabolism
rbk00260  Glycine, serine and threonine metabolism
rbk00270  Cysteine and methionine metabolism
rbk00290  Valine, leucine and isoleucine biosynthesis
rbk00300  Lysine biosynthesis
rbk00330  Arginine and proline metabolism
rbk00340  Histidine metabolism
rbk00380  Tryptophan metabolism
rbk00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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