KEGG   PATHWAY: rbw00630
Entry
rbw00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium brockwellii
Class
Metabolism; Carbohydrate metabolism
Pathway map
rbw00630  Glyoxylate and dicarboxylate metabolism
rbw00630

Module
rbw_M00012  Glyoxylate cycle [PATH:rbw00630]
rbw_M00621  Glycine cleavage system [PATH:rbw00630]
rbw_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rbw00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium brockwellii [GN:rbw]
Gene
RLCC275e_01975  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RLCC275e_21805  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RLCC275e_19675  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
RLCC275e_22155  malate synthase G [KO:K01638] [EC:2.3.3.9]
RLCC275e_20395  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RLCC275e_09170  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RLCC275e_10385  citrate synthase [KO:K01647] [EC:2.3.3.1]
RLCC275e_10390  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RLCC275e_20880  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RLCC275e_21330  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RLCC275e_32205  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RLCC275e_25115  thiolase family protein [KO:K00626] [EC:2.3.1.9]
RLCC275e_01070  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RLCC275e_21325  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RLCC275e_06945  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RLCC275e_10640  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
RLCC275e_10665  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RLCC275e_30730  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RLCC275e_02360  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
RLCC275e_02365  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RLCC275e_02370  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
RLCC275e_03310  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
RLCC275e_08185  catalase [KO:K03781] [EC:1.11.1.6]
RLCC275e_22660  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RLCC275e_22870  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLCC275e_25460  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLCC275e_25535  hypothetical protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLCC275e_27660  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RLCC275e_02565  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RLCC275e_10680  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
RLCC275e_11425  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RLCC275e_01885  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLCC275e_05575  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLCC275e_09850  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RLCC275e_14655  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLCC275e_16115  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RLCC275e_30225  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RLCC275e_06380  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RLCC275e_10720  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RLCC275e_30155  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
RLCC275e_30215  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
RLCC275e_10710  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
RLCC275e_32230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLCC275e_09230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLCC275e_20345  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RLCC275e_10715  gcvH; glycine cleavage system protein GcvH [KO:K02437]
RLCC275e_27430  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
RLCC275e_17365  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
RLCC275e_17400  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RLCC275e_32580  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RLCC275e_11800  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RLCC275e_17270  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RLCC275e_17405  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RLCC275e_08110  glycerate kinase [KO:K11529] [EC:2.7.1.165]
RLCC275e_26025  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RLCC275e_27645  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RLCC275e_18920  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RLCC275e_20140  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
RLCC275e_20150  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RLCC275e_20155  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
RLCC275e_20160  formate dehydrogenase subunit gamma [KO:K00127]
RLCC275e_23100  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RLCC275e_30220  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RLCC275e_32370  formamidase [KO:K01455] [EC:3.5.1.49]
RLCC275e_28780  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rbw00010  Glycolysis / Gluconeogenesis
rbw00020  Citrate cycle (TCA cycle)
rbw00030  Pentose phosphate pathway
rbw00053  Ascorbate and aldarate metabolism
rbw00071  Fatty acid degradation
rbw00230  Purine metabolism
rbw00250  Alanine, aspartate and glutamate metabolism
rbw00260  Glycine, serine and threonine metabolism
rbw00620  Pyruvate metabolism
rbw00710  Carbon fixation by Calvin cycle
rbw00750  Vitamin B6 metabolism
rbw00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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