KEGG   PATHWAY: ret00030
Entry
ret00030                    Pathway                                
Name
Pentose phosphate pathway - Rhizobium etli CFN 42
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ret00030  Pentose phosphate pathway
ret00030

Module
ret_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ret00030]
ret_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ret00030]
ret_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ret00030]
ret_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ret00030]
ret_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ret00030]
ret_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ret00030]
Other DBs
GO: 0006098
Organism
Rhizobium etli CFN 42 [GN:ret]
Gene
RHE_CH00477  pgi; glucose-6-phosphate isomerase protein [KO:K01810] [EC:5.3.1.9]
RHE_CH01185  zwf2; glucose-6-phosphate 1-dehydrogenase protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RHE_CH00704  zwf1; glucose-6-phosphate 1-dehydrogenase protein [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RHE_CH00703  pgl; 6-phosphogluconolactonase protein [KO:K01057] [EC:3.1.1.31]
RHE_CH02468  gnd; 6-phosphogluconate dehydrogenase (decarboxylating) protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RHE_CH03488  probable 6-phosphogluconate dehydrogenase protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RHE_CH02270  rpe; D-ribulose-5 phosphate 3-epimerase protein [KO:K01783] [EC:5.1.3.1]
RHE_CH02397  tktA; transketolase C-terminal subunit protein [KO:K00615] [EC:2.2.1.1]
RHE_CH02398  tktB; transketolase N-terminal subunit protein [KO:K00615] [EC:2.2.1.1]
RHE_CH03495  tkt; transketolase protein [KO:K00615] [EC:2.2.1.1]
RHE_CH03667  tal; transaldolase protein [KO:K00616] [EC:2.2.1.2]
RHE_CH02380  rpiA; ribose 5-phosphate isomerase protein [KO:K01807] [EC:5.3.1.6]
RHE_CH03442  probable phosphoketolase protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
RHE_CH00193  deoC; 2-deoxyribose-5-phosphate aldolase protein [KO:K01619] [EC:4.1.2.4]
RHE_CH00409  rbsK; ribose kinase protein [KO:K00852] [EC:2.7.1.15]
RHE_PC00098  probable ribokinase protein [KO:K00852] [EC:2.7.1.15]
RHE_CH00198  deoB; phosphopentomutase protein [KO:K01839] [EC:5.4.2.7]
RHE_CH03597  pgm; phosphoglucomutase protein [KO:K01835] [EC:5.4.2.2]
RHE_CH00154  gmk1; guanylate kinase (GMP kinase) protein [KO:K05774] [EC:2.7.4.23]
RHE_CH03023  prsAch; ribose-phosphate pyrophosphokinase protein [KO:K00948] [EC:2.7.6.1]
RHE_CH00702  edd; phosphogluconate dehydratase protein [KO:K01690] [EC:4.2.1.12]
RHE_CH03635  eda; 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RHE_CH01222  gcd; glucose dehydrogenase (pyrroloquinoline-quinone) protein [KO:K00117] [EC:1.1.5.2]
RHE_CH03704  putative gluconolactonase protein [KO:K01053] [EC:3.1.1.17]
RHE_PC00140  probable gluconolactonase protein [KO:K01053] [EC:3.1.1.17]
RHE_PF00485  probable gluconolactonase precursor protein [KO:K01053] [EC:3.1.1.17]
RHE_CH00741  gntK; gluconokinase protein [KO:K00851] [EC:2.7.1.12]
RHE_PC00145  idnK; gluconate kinase protein [KO:K00851] [EC:2.7.1.12]
RHE_CH03102  kdgK; 2-dehydro-3-deoxygluconokinase protein [KO:K00874] [EC:2.7.1.45]
RHE_CH01794  ttuD; hydroxypyruvate reductase protein [KO:K11529] [EC:2.7.1.165]
RHE_CH03500  fbaB; fructose-bisphosphate aldolase protein [KO:K01623] [EC:4.1.2.13]
RHE_CH02862  pfk; 6-phosphofructokinase protein [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ret00010  Glycolysis / Gluconeogenesis
ret00040  Pentose and glucuronate interconversions
ret00052  Galactose metabolism
ret00230  Purine metabolism
ret00240  Pyrimidine metabolism
ret00340  Histidine metabolism
ret00630  Glyoxylate and dicarboxylate metabolism
ret00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system