KEGG   PATHWAY: rhl00630
Entry
rhl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium favelukesii
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhl00630  Glyoxylate and dicarboxylate metabolism
rhl00630

Module
rhl_M00012  Glyoxylate cycle [PATH:rhl00630]
rhl_M00621  Glycine cleavage system [PATH:rhl00630]
rhl_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rhl00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium favelukesii [GN:rhl]
Gene
LPU83_0851  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LPU83_4193  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
LPU83_3792  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
LPU83_0052  glcB; malate synthase [KO:K01638] [EC:2.3.3.9]
LPU83_3920  mdh3; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPU83_2417  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LPU83_2418  cisZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
LPU83_2568  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LPU83_3973  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LPU83_pLPU83d0283  putative acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
LPU83_4083  phbA; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPU83_0709  fadA; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPU83_4082  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LPU83_1671  gloA1; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LPU83_2363  pccA; propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
LPU83_2355  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LPU83_pLPU83d1821  bhbA; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LPU83_0917  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
LPU83_0918  glcE; glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
LPU83_0919  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
LPU83_pLPU83d0346  katE; Catalase C [KO:K03781] [EC:1.11.1.6]
LPU83_0104  gyaR1; putative D-2-hydroxyacid dehydrogenase protein [KO:K00015] [EC:1.1.1.26]
LPU83_pLPU83d0743  NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPU83_0252  putative hydroxyacid dehydrogenase protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPU83_0955  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LPU83_2352  gph1; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LPU83_2241  putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LPU83_pLPU83d1475  glnII; Glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
LPU83_2772  glnA7; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPU83_1288  glnA3; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPU83_2462  glnA5; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPU83_0845  glnA1; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPU83_1465  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LPU83_2346  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LPU83_pLPU83c0697  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
LPU83_2348  gcvT3; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
LPU83_pLPU83c0703  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
LPU83_pLPU83d0278  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPU83_2555  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPU83_3911  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPU83_2347  gcvH; Glycine cleavage system H protein, mitochondrial [KO:K02437]
LPU83_pLPU83c0017  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LPU83_2612  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LPU83_2049  ttuD; hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
LPU83_pLPU83d0735  ycsA; putative tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPU83_pLPU83d1678  ttuC; putative tartrate dehydrogenase/decarboxylase ttuC [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPU83_3645  eda; 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LPU83_3889  fdsD; formate dehydrogenase, delta subunit [KO:K00126] [EC:1.17.1.9]
LPU83_pLPU83d0665  fdoG1; Formate dehydrogenase-O major subunit [KO:K00123] [EC:1.17.1.9]
LPU83_pLPU83d0666  fdoG3; Formate dehydrogenase-O major subunit [KO:K00123] [EC:1.17.1.9]
LPU83_3891  fdsA; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
LPU83_pLPU83d0667  fdnH; Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit [KO:K00124]
LPU83_3892  fdsB; NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
LPU83_pLPU83d0668  formate dehydrogenase subunit gamma [KO:K00127]
LPU83_3893  fdsG; formate dehydrogenase subunit gamma [KO:K00127]
LPU83_0198  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LPU83_pLPU83c0695  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LPU83_pLPU83c0720  amiF; formamidase [KO:K01455] [EC:3.5.1.49]
LPU83_pLPU83d1868  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rhl00010  Glycolysis / Gluconeogenesis
rhl00020  Citrate cycle (TCA cycle)
rhl00030  Pentose phosphate pathway
rhl00053  Ascorbate and aldarate metabolism
rhl00071  Fatty acid degradation
rhl00230  Purine metabolism
rhl00250  Alanine, aspartate and glutamate metabolism
rhl00260  Glycine, serine and threonine metabolism
rhl00620  Pyruvate metabolism
rhl00710  Carbon fixation by Calvin cycle
rhl00750  Vitamin B6 metabolism
rhl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system