KEGG   PATHWAY: rli00970
Entry
rli00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Roseobacter litoralis
Class
Genetic Information Processing; Translation
Pathway map
rli00970  Aminoacyl-tRNA biosynthesis
rli00970

Organism
Roseobacter litoralis [GN:rli]
Gene
RLO149_c002000  trnA1; tRNA-Ala [KO:K14218]
RLO149_c038170  trnA2; tRNA-Ala [KO:K14218]
RLO149_c033180  trnR3; tRNA-Arg [KO:K14219]
RLO149_c000260  trnR1; tRNA-Arg [KO:K14219]
RLO149_c035260  trnR4; tRNA-Arg [KO:K14219]
RLO149_c018610  trnR2; tRNA-Arg [KO:K14219]
RLO149_c022710  trnN; tRNA-Asn [KO:K14220]
RLO149_c016100  trnD; tRNA-Asp [KO:K14221]
RLO149_c028840  trnC; tRNA-Cys [KO:K14222]
RLO149_c027980  trnQ; tRNA-Gln [KO:K14223]
RLO149_c020180  trnE; tRNA-Glu [KO:K14224]
RLO149_c025890  trnG3; tRNA-Gly [KO:K14225]
RLO149_c011160  trnG1; tRNA-Gly [KO:K14225]
RLO149_c018340  trnG2; tRNA-Gly [KO:K14225]
RLO149_c029100  trnH; tRNA-His [KO:K14226]
RLO149_c038180  trnI; tRNA-Ile [KO:K14227]
RLO149_c039550  trnL5; tRNA-Leu [KO:K14228]
RLO149_c019810  trnL3; tRNA-Leu [KO:K14228]
RLO149_c016520  trnL2; tRNA-Leu [KO:K14228]
RLO149_c010670  trnL1; tRNA-Leu [KO:K14228]
RLO149_c020460  trnL4; tRNA-Leu [KO:K14228]
RLO149_c040350  trnK; tRNA-Lys [KO:K14229]
RLO149_c034960  trnM2; tRNA-Met [KO:K14230]
RLO149_c022660  trnM1; tRNA-Met [KO:K14230]
RLO149_c036990  trnM3; tRNA-Met [KO:K14230]
RLO149_c028830  trnF; tRNA-Phe [KO:K14231]
RLO149_c024170  trnP2; tRNA-Pro [KO:K14232]
RLO149_c023870  trnP1; tRNA-Pro [KO:K14232]
RLO149_c022900  trnS3; tRNA-Ser [KO:K14233]
RLO149_c018940  trnS1; tRNA-Ser [KO:K14233]
RLO149_c026600  trnS4; tRNA-Ser [KO:K14233]
RLO149_c022240  trnS2; tRNA-Ser [KO:K14233]
RLO149_c002670  trnT1; tRNA-Thr [KO:K14234]
RLO149_c013590  trnT2; tRNA-Thr [KO:K14234]
RLO149_c004300  trnW; tRNA-Trp [KO:K14235]
RLO149_c016070  trnV1; tRNA-Val [KO:K14237]
RLO149_c038290  trnV2; tRNA-Val [KO:K14237]
RLO149_c024380  gltX2; glutamyl-tRNA synthetase GltX [KO:K01885] [EC:6.1.1.17]
RLO149_c035620  gltX1; glutamyl-tRNA synthetase GltX [KO:K01885] [EC:6.1.1.17]
RLO149_c011440  gatA; glutamyl-tRNA(Gln) amidotransferase subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
RLO149_c017000  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
RLO149_c039250  amidase [KO:K02433] [EC:6.3.5.6 6.3.5.7]
RLO149_c025500  gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
RLO149_c011450  gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
RLO149_c018410  alaS; alanyl-tRNA synthetase AlaS [KO:K01872] [EC:6.1.1.7]
RLO149_c036020  aspS; aspartyl-tRNA synthetase AspS [KO:K01876] [EC:6.1.1.12]
RLO149_c010400  glyQ; glycyl-tRNA synthetase subunit alpha [KO:K01878] [EC:6.1.1.14]
RLO149_c010420  hypothetical protein [KO:K01879] [EC:6.1.1.14]
RLO149_c009790  thrS; threonyl-tRNA synthetase ThrS [KO:K01868] [EC:6.1.1.3]
RLO149_c020120  serS; seryl-tRNA synthetase SerS [KO:K01875] [EC:6.1.1.11]
RLO149_c024090  cysS; cysteinyl-tRNA synthetase CysS [KO:K01883] [EC:6.1.1.16]
RLO149_c020440  metG; methionyl-tRNA synthetase MetG [KO:K01874] [EC:6.1.1.10]
RLO149_c034460  fmt; methionyl-tRNA formyltransferase Fmt [KO:K00604] [EC:2.1.2.9]
RLO149_c044330  formyl transferase-like protein [KO:K00604] [EC:2.1.2.9]
RLO149_c029650  valS; valyl-tRNA synthetase ValS [KO:K01873] [EC:6.1.1.9]
RLO149_c039390  leuS; leucyl-tRNA synthetase LeuS [KO:K01869] [EC:6.1.1.4]
RLO149_c012170  ileS; isoleucyl-tRNA synthetase IleS [KO:K01870] [EC:6.1.1.5]
RLO149_c035370  putative lysyl-tRNA synthetase, archaeal type [KO:K04566] [EC:6.1.1.6]
RLO149_c023930  argS; arginyl-tRNA synthetase ArgS [KO:K01887] [EC:6.1.1.19]
RLO149_c011910  proS; prolyl-tRNA synthetase ProS [KO:K01881] [EC:6.1.1.15]
RLO149_c004070  hisS; histidyl-tRNA synthetase HisS [KO:K01892] [EC:6.1.1.21]
RLO149_c002180  pheS; phenylalanyl-tRNA synthetase alpha chain [KO:K01889] [EC:6.1.1.20]
RLO149_c002190  pheT; phenylalanyl-tRNA synthetase beta chain [KO:K01890] [EC:6.1.1.20]
RLO149_c023750  tyrS; tyrosyl-tRNA synthetase TyrS [KO:K01866] [EC:6.1.1.1]
RLO149_c035940  trpS; tryptophanyl-tRNA synthetase TrpS [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
rli00250  Alanine, aspartate and glutamate metabolism
rli00260  Glycine, serine and threonine metabolism
rli00270  Cysteine and methionine metabolism
rli00290  Valine, leucine and isoleucine biosynthesis
rli00300  Lysine biosynthesis
rli00330  Arginine and proline metabolism
rli00340  Histidine metabolism
rli00380  Tryptophan metabolism
rli00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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