KEGG   PATHWAY: rmt00630
Entry
rmt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseomonas marmotae
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmt00630  Glyoxylate and dicarboxylate metabolism
rmt00630

Module
rmt_M00012  Glyoxylate cycle [PATH:rmt00630]
rmt_M00621  Glycine cleavage system [PATH:rmt00630]
Other DBs
GO: 0046487 0043648
Organism
Roseomonas marmotae [GN:rmt]
Gene
IAI58_16180  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
IAI58_02420  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
IAI58_15155  malate synthase G [KO:K01638] [EC:2.3.3.9]
IAI58_05650  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IAI58_09750  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
IAI58_07605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IAI58_14330  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IAI58_16085  SDR family oxidoreductase [KO:K00023] [EC:1.1.1.36]
IAI58_06670  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
IAI58_16575  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
IAI58_16570  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
IAI58_16565  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
IAI58_17895  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
IAI58_20360  catalase [KO:K03781] [EC:1.11.1.6]
IAI58_08720  catalase [KO:K03781] [EC:1.11.1.6]
IAI58_06460  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
IAI58_18395  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
IAI58_11205  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
IAI58_13805  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
IAI58_09555  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
IAI58_12340  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
IAI58_10095  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
IAI58_14990  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
IAI58_15000  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
IAI58_05680  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAI58_10475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAI58_14995  gcvH; glycine cleavage system protein GcvH [KO:K02437]
IAI58_11000  hydroxypyruvate isomerase family protein [KO:K01816] [EC:5.3.1.22]
IAI58_04075  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
IAI58_09195  glycerate kinase [KO:K11529] [EC:2.7.1.165]
IAI58_17340  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
IAI58_05495  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
IAI58_11855  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IAI58_19615  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
IAI58_02970  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
IAI58_19620  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
IAI58_02975  4Fe-4S dicluster domain-containing protein [KO:K00124]
IAI58_02980  formate dehydrogenase subunit gamma [KO:K00127]
IAI58_02275  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
IAI58_13970  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rmt00010  Glycolysis / Gluconeogenesis
rmt00020  Citrate cycle (TCA cycle)
rmt00030  Pentose phosphate pathway
rmt00053  Ascorbate and aldarate metabolism
rmt00071  Fatty acid degradation
rmt00230  Purine metabolism
rmt00250  Alanine, aspartate and glutamate metabolism
rmt00260  Glycine, serine and threonine metabolism
rmt00620  Pyruvate metabolism
rmt00710  Carbon fixation by Calvin cycle
rmt00750  Vitamin B6 metabolism
rmt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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