KEGG   PATHWAY: rmu03430
Entry
rmu03430                    Pathway                                
Name
Mismatch repair - Rothia mucilaginosa
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
rmu03430  Mismatch repair
rmu03430

Other DBs
GO: 0006298
Organism
Rothia mucilaginosa [GN:rmu]
Gene
RMDY18_06410  superfamily I DNA and RNA helicase [KO:K03657] [EC:5.6.2.4]
RMDY18_06430  superfamily I DNA and RNA helicase [KO:K03657] [EC:5.6.2.4]
RMDY18_02680  superfamily I DNA and RNA helicase [KO:K03657] [EC:5.6.2.4]
RMDY18_05640  exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
RMDY18_05630  exonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
RMDY18_11850  single-stranded DNA-binding protein [KO:K03111]
RMDY18_19750  single-stranded DNA-binding protein [KO:K03111]
RMDY18_13320  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
RMDY18_00020  DNA polymerase sliding clamp subunit [KO:K02338] [EC:2.7.7.7]
RMDY18_17710  DNA polymerase III, gamma/tau subunits [KO:K02343] [EC:2.7.7.7]
RMDY18_10070  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
RMDY18_17380  ATPase involved in DNA replication [KO:K02341] [EC:2.7.7.7]
RMDY18_06390  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
RMDY18_15290  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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