KEGG   PATHWAY: rpln00030
Entry
rpln00030                   Pathway                                
Name
Pentose phosphate pathway - Raoultella planticola
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpln00030  Pentose phosphate pathway
rpln00030

Module
rpln_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rpln00030]
rpln_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rpln00030]
rpln_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rpln00030]
rpln_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rpln00030]
rpln_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rpln00030]
rpln_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:rpln00030]
rpln_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:rpln00030]
Other DBs
GO: 0006098
Organism
Raoultella planticola [GN:rpln]
Gene
B1209_25460  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
B1209_23050  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
B1209_09375  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
B1209_18845  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
B1209_24320  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
B1209_08315  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
B1209_01880  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
B1209_19785  transketolase [KO:K00615] [EC:2.2.1.1]
B1209_07250  transketolase [KO:K00615] [EC:2.2.1.1]
B1209_03940  transketolase [KO:K00615] [EC:2.2.1.1]
B1209_23140  transaldolase [KO:K00616] [EC:2.2.1.2]
B1209_04010  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
B1209_23275  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
B1209_13415  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
B1209_12960  ribokinase [KO:K00852] [EC:2.7.1.15]
B1209_00140  ribokinase [KO:K00852] [EC:2.7.1.15]
B1209_26800  ribokinase [KO:K00852] [EC:2.7.1.15]
B1209_08915  ribokinase [KO:K00852] [EC:2.7.1.15]
B1209_26560  ribokinase [KO:K00852] [EC:2.7.1.15]
B1209_23265  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
B1209_19160  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
B1209_15010  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
B1209_25070  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
B1209_10380  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
B1209_09380  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
B1209_09385  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B1209_22505  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
B1209_11180  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
B1209_11175  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
B1209_00935  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
B1209_01650  gluconokinase [KO:K00851] [EC:2.7.1.12]
B1209_22985  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
B1209_00945  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
B1209_01140  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
B1209_23040  PTS fructose transporter subunit IID [KO:K17467]
B1209_08050  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
B1209_03985  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
B1209_26595  iron ABC transporter substrate-binding protein [KO:K01624] [EC:4.1.2.13]
B1209_24395  fructose-bisphosphatase class I [KO:K03841] [EC:3.1.3.11]
B1209_00525  fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
B1209_03960  fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
B1209_26405  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
B1209_26610  permease [KO:K00850] [EC:2.7.1.11]
B1209_10670  6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
rpln00010  Glycolysis / Gluconeogenesis
rpln00040  Pentose and glucuronate interconversions
rpln00052  Galactose metabolism
rpln00230  Purine metabolism
rpln00240  Pyrimidine metabolism
rpln00340  Histidine metabolism
rpln00630  Glyoxylate and dicarboxylate metabolism
rpln00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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