KEGG   PATHWAY: rpus00630
Entry
rpus00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Agrobacterium pusense CFBP5875
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpus00630  Glyoxylate and dicarboxylate metabolism
rpus00630

Module
rpus_M00012  Glyoxylate cycle [PATH:rpus00630]
rpus_M00621  Glycine cleavage system [PATH:rpus00630]
rpus_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpus00630]
Other DBs
GO: 0046487 0043648
Organism
Agrobacterium pusense CFBP5875 [GN:rpus]
Gene
CFBP5875_01250  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CFBP5875_12140  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CFBP5875_12830  malate synthase G [KO:K01638] [EC:2.3.3.9]
CFBP5875_11610  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFBP5875_05830  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CFBP5875_11845  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CFBP5875_14255  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFBP5875_11065  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
CFBP5875_12260  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CFBP5875_00715  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CFBP5875_12265  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CFBP5875_16775  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CFBP5875_16785  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CFBP5875_16800  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CFBP5875_18750  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
CFBP5875_16780  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CFBP5875_01830  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
CFBP5875_01840  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
CFBP5875_01845  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
CFBP5875_22800  catalase [KO:K03781] [EC:1.11.1.6]
CFBP5875_12970  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CFBP5875_19745  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CFBP5875_20900  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CFBP5875_18355  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
CFBP5875_06695  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CFBP5875_02015  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CFBP5875_06240  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CFBP5875_07450  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CFBP5875_09110  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CFBP5875_10435  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CFBP5875_13530  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CFBP5875_01225  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CFBP5875_04800  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CFBP5875_06285  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CFBP5875_06275  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
CFBP5875_11575  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5875_05890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBP5875_06280  gcvH; glycine cleavage system protein GcvH [KO:K02437]
CFBP5875_12100  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5875_19925  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5875_14690  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
CFBP5875_21885  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CFBP5875_20885  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CFBP5875_15180  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CFBP5875_23040  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
CFBP5875_22660  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CFBP5875_22655  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CFBP5875_22650  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
CFBP5875_22645  formate dehydrogenase subunit gamma [KO:K00127]
CFBP5875_10700  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CFBP5875_15890  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CFBP5875_18660  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpus00010  Glycolysis / Gluconeogenesis
rpus00020  Citrate cycle (TCA cycle)
rpus00030  Pentose phosphate pathway
rpus00053  Ascorbate and aldarate metabolism
rpus00071  Fatty acid degradation
rpus00230  Purine metabolism
rpus00250  Alanine, aspartate and glutamate metabolism
rpus00260  Glycine, serine and threonine metabolism
rpus00620  Pyruvate metabolism
rpus00710  Carbon fixation by Calvin cycle
rpus00750  Vitamin B6 metabolism
rpus00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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