KEGG   PATHWAY: rpx00630
Entry
rpx00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodopseudomonas palustris DX-1
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpx00630  Glyoxylate and dicarboxylate metabolism
rpx00630

Module
rpx_M00012  Glyoxylate cycle [PATH:rpx00630]
rpx_M00621  Glycine cleavage system [PATH:rpx00630]
rpx_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpx00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodopseudomonas palustris DX-1 [GN:rpx]
Gene
Rpdx1_4610  isocitrate lyase and phosphorylmutase [KO:K01637] [EC:4.1.3.1]
Rpdx1_0426  acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]
Rpdx1_1931  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpdx1_3603  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rpdx1_4436  malate synthase G [KO:K01638] [EC:2.3.3.9]
Rpdx1_0446  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rpdx1_2597  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rpdx1_0436  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rpdx1_3601  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_0561  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_1908  Thiolase-like protein [KO:K00626] [EC:2.3.1.9]
Rpdx1_1635  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_2237  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_3775  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_3821  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_4564  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_0977  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rpdx1_0562  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Rpdx1_2569  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Rpdx1_2252  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01965] [EC:6.4.1.3]
Rpdx1_2227  carboxyl transferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Rpdx1_3688  Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Rpdx1_3690  methylmalonyl-CoA mutase, large subunit [KO:K01847] [EC:5.4.99.2]
Rpdx1_1301  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Rpdx1_0596  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Rpdx1_0597  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Rpdx1_1302  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Rpdx1_0598  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Rpdx1_1303  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Rpdx1_0789  Catalase [KO:K03781] [EC:1.11.1.6]
Rpdx1_0259  Glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
Rpdx1_3526  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Rpdx1_0372  Ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Rpdx1_3960  Ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Rpdx1_4819  Ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
Rpdx1_3959  Ribulose-bisphosphate carboxylase [KO:K01602] [EC:4.1.1.39]
Rpdx1_0949  aminotransferase class V [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Rpdx1_2474  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Rpdx1_4426  Glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
Rpdx1_1136  glutamine synthetase catalytic region [KO:K01915] [EC:6.3.1.2]
Rpdx1_2779  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rpdx1_2708  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rpdx1_1499  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Rpdx1_1501  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Rpdx1_0453  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpdx1_2640  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rpdx1_1500  glycine cleavage system H protein [KO:K02437]
Rpdx1_3733  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rpdx1_3789  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rpdx1_0785  putative NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
Rpdx1_0783  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Rpdx1_0782  NADH dehydrogenase (quinone) [KO:K00124]
Rpdx1_0781  NADH dehydrogenase (ubiquinone) 24 kDa subunit [KO:K00127]
Rpdx1_2827  putative arylformamidase (kynurenine formamidase) (KF) [KO:K01432] [EC:3.5.1.9]
Rpdx1_2455  hypothetical protein [KO:K01432] [EC:3.5.1.9]
Rpdx1_4290  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Rpdx1_4193  Formamidase [KO:K01455] [EC:3.5.1.49]
Rpdx1_3576  Formamidase [KO:K01455] [EC:3.5.1.49]
Rpdx1_3558  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpx00010  Glycolysis / Gluconeogenesis
rpx00020  Citrate cycle (TCA cycle)
rpx00030  Pentose phosphate pathway
rpx00053  Ascorbate and aldarate metabolism
rpx00071  Fatty acid degradation
rpx00230  Purine metabolism
rpx00250  Alanine, aspartate and glutamate metabolism
rpx00260  Glycine, serine and threonine metabolism
rpx00620  Pyruvate metabolism
rpx00710  Carbon fixation by Calvin cycle
rpx00750  Vitamin B6 metabolism
rpx00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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