KEGG   PATHWAY: rrd00630
Entry
rrd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rubrobacter radiotolerans
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrd00630  Glyoxylate and dicarboxylate metabolism
rrd00630

Module
rrd_M00012  Glyoxylate cycle [PATH:rrd00630]
rrd_M00621  Glycine cleavage system [PATH:rrd00630]
Other DBs
GO: 0046487 0043648
Organism
Rubrobacter radiotolerans [GN:rrd]
Gene
RradSPS_1854  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RradSPS_0746  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RradSPS_1855  malate synthase A [KO:K01638] [EC:2.3.3.9]
RradSPS_1262  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
RradSPS_1617  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RradSPS_2228  Aconitase A [KO:K01681] [EC:4.2.1.3]
RradSPS_0604  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RradSPS_0424  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RradSPS_0600  Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [KO:K00023] [EC:1.1.1.36]
RradSPS_1257  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RradSPS_0448  Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta) [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RradSPS_0454  Acetyl/propionyl-CoA carboxylase alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
RradSPS_2060  methylmalonyl-CoA mutase C-terminal domain [KO:K01849] [EC:5.4.99.2]
RradSPS_1258  methylmalonyl-CoA mutase N-terminal domain [KO:K01848] [EC:5.4.99.2]
RradSPS_0427  methylmalonyl-CoA mutase N-terminal domain [KO:K01848] [EC:5.4.99.2]
RradSPS_2263  FAD/FMN-containing dehydrogenase [KO:K00104] [EC:1.1.99.14]
RradSPS_2262  FAD/FMN-containing dehydrogenase [KO:K11472] [EC:1.1.99.14]
RradSPS_2261  Fe-S oxidoreductase [KO:K11473] [EC:1.1.99.14]
RradSPS_2227  Lactate dehydrogenase and related dehydrogenase [KO:K00015] [EC:1.1.1.26]
RradSPS_2554  Conserved region in glutamate synthase [KO:K00284] [EC:1.4.7.1]
RradSPS_1120  GlnA: glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
RradSPS_2751  Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RradSPS_1590  Glycine/serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RradSPS_2743  Glycine cleavage system protein P (pyridoxal-binding) N-terminal domain [KO:K00282] [EC:1.4.4.2]
RradSPS_2742  Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain [KO:K00283] [EC:1.4.4.2]
RradSPS_2741  gcvT: glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
RradSPS_0632  Glycine cleavage system T protein (aminomethyltransferase) [KO:K00605] [EC:2.1.2.10]
RradSPS_0395  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RradSPS_2740  gcvH: glycine cleavage system H protein [KO:K02437]
RradSPS_1314  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
RradSPS_1312  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RradSPS_1313  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RradSPS_1640  3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase [KO:K00042] [EC:1.1.1.60]
RradSPS_2590  TIGR00045: glycerate kinase [KO:K00865] [EC:2.7.1.165]
RradSPS_2264  Putative glycerate kinase [KO:K11529] [EC:2.7.1.165]
RradSPS_2571  Molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
RradSPS_2572  Molybdopterin oxidoreductase Fe4S4 domain [KO:K00123] [EC:1.17.1.9]
RradSPS_2569  4Fe-4S dicluster domain [KO:K00124]
RradSPS_0555  alpha/beta hydrolase fold [KO:K01432] [EC:3.5.1.9]
RradSPS_1088  PurU: formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RradSPS_2565  putative acetamidase/formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rrd00010  Glycolysis / Gluconeogenesis
rrd00020  Citrate cycle (TCA cycle)
rrd00030  Pentose phosphate pathway
rrd00053  Ascorbate and aldarate metabolism
rrd00071  Fatty acid degradation
rrd00230  Purine metabolism
rrd00250  Alanine, aspartate and glutamate metabolism
rrd00260  Glycine, serine and threonine metabolism
rrd00620  Pyruvate metabolism
rrd00710  Carbon fixation by Calvin cycle
rrd00750  Vitamin B6 metabolism
rrd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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