KEGG   PATHWAY: rsi00030
Entry
rsi00030                    Pathway                                
Name
Pentose phosphate pathway - Runella slithyformis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsi00030  Pentose phosphate pathway
rsi00030

Module
rsi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rsi00030]
rsi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rsi00030]
rsi_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:rsi00030]
Other DBs
GO: 0006098
Organism
Runella slithyformis [GN:rsi]
Gene
Runsl_4028  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Runsl_2242  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Runsl_4488  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Runsl_4397  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Runsl_3968  Transketolase central region [KO:K00615] [EC:2.2.1.1]
Runsl_3971  Transketolase [KO:K00615] [EC:2.2.1.1]
Runsl_3656  Transketolase [KO:K00615] [EC:2.2.1.1]
Runsl_3660  Transketolase [KO:K00615] [EC:2.2.1.1]
Runsl_1286  transaldolase [KO:K00616] [EC:2.2.1.2]
Runsl_0202  CBS domain containing protein [KO:K00616] [EC:2.2.1.2]
Runsl_4861  sugar-phosphate isomerase, RpiB/LacA/LacB family [KO:K01808] [EC:5.3.1.6]
Runsl_0373  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Runsl_2166  deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K01619] [EC:4.1.2.4]
Runsl_4755  ribokinase [KO:K00852] [EC:2.7.1.15]
Runsl_0542  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [KO:K01835] [EC:5.4.2.2]
Runsl_4784  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Runsl_5021  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Runsl_2285  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Runsl_4968  Glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
Runsl_5686  3-oxoacyl-(acyl-carrier-protein) reductase [KO:K00034] [EC:1.1.1.47]
Runsl_2541  3-oxoacyl-(acyl-carrier-protein) reductase [KO:K00034] [EC:1.1.1.47]
Runsl_2808  Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Runsl_5493  Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Runsl_0537  heme-binding protein [KO:K00117] [EC:1.1.5.2]
Runsl_5683  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Runsl_3279  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Runsl_3865  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
Runsl_5537  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Runsl_0190  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
Runsl_4492  Gluconokinase [KO:K25031] [EC:2.7.1.12]
Runsl_0656  Gluconokinase [KO:K25031] [EC:2.7.1.12]
Runsl_2284  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Runsl_3991  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Runsl_2592  fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
Runsl_5549  Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Runsl_0094  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Runsl_0663  1-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
rsi00010  Glycolysis / Gluconeogenesis
rsi00040  Pentose and glucuronate interconversions
rsi00052  Galactose metabolism
rsi00230  Purine metabolism
rsi00240  Pyrimidine metabolism
rsi00340  Histidine metabolism
rsi00630  Glyoxylate and dicarboxylate metabolism
rsi00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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