KEGG   PATHWAY: rta00630
Entry
rta00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ramlibacter tataouinensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
rta00630  Glyoxylate and dicarboxylate metabolism
rta00630

Module
rta_M00012  Glyoxylate cycle [PATH:rta00630]
rta_M00621  Glycine cleavage system [PATH:rta00630]
Other DBs
GO: 0046487 0043648
Organism
Ramlibacter tataouinensis [GN:rta]
Gene
Rta_23660  aceA; Isocitratase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
Rta_15940  acsA; candidate acetyl-coenzyme A synthetase(Acetate--CoA ligase) [KO:K01895] [EC:6.2.1.1]
Rta_10430  Acetyl-CoA synthase (Acetate thiokinase) [KO:K01895] [EC:6.2.1.1]
Rta_02700  glcB; Candidate Malate synthase [KO:K01638] [EC:2.3.3.9]
Rta_28060  Candidate malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Rta_28130  gltA; Candidate citrate synthase [KO:K01647] [EC:2.3.3.1]
Rta_27960  acnA; Candidate aconitase (aconitate hydratase) [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Rta_28030  acnB; Aconitase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rta_18100  Acetyl-CoA C-acetyltransferase-like protein [KO:K00626] [EC:2.3.1.9]
Rta_05680  Acetyl-CoA C-acetyltransferase-like protein [KO:K00626] [EC:2.3.1.9]
Rta_20040  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Rta_18110  phbB; candidate acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Rta_18270  accA; Candidate Acetyl or propionyl-CoA carboxylase subunit [KO:K01965] [EC:6.4.1.3]
Rta_18250  candidate propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Rta_18230  candidate methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Rta_36670  glcD; Candidate glycolate oxidase subunit glcD [KO:K00104] [EC:1.1.99.14]
Rta_01530  glcE; Candidate Glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
Rta_01540  gclF; Candidate Glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
Rta_35880  katE; Candidate hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
Rta_33070  katE; Candidate hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
Rta_20230  katE; Candidate hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
Rta_06380  Hydroxyperoxidase II-like protein [KO:K03781] [EC:1.11.1.6]
Rta_06660  D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Rta_24600  tkrA; Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase) [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Rta_35860  gph; candidate phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Rta_28620  phosphoglycolate phosphatase-like protein [KO:K01091] [EC:3.1.3.18]
Rta_38110  phosphoglycolate phosphatase-like protein [KO:K01091] [EC:3.1.3.18]
Rta_16260  candidate serine--glyoxylate aminotransferase (Serine--glyoxylate transaminase) [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Rta_14420  glnA; candidate glutamine synthetase (Glutamate--ammonia ligase) [KO:K01915] [EC:6.3.1.2]
Rta_17990  glutamine synthetase (Glutamate--ammonia ligase)-like protein [KO:K01915] [EC:6.3.1.2]
Rta_37590  glutamine synthetase (Glutamate--ammonia ligase)-like protein [KO:K01915] [EC:6.3.1.2]
Rta_15320  glyA; candidate serine hydroxymethyltransferase (Serine methylase) [KO:K00600] [EC:2.1.2.1]
Rta_14660  gcvP; Glycine cleavage system P-protein [KO:K00281] [EC:1.4.4.2]
Rta_14680  gcvT; candidate aminomethyltransferase (Glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]
Rta_18700  Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
Rta_18810  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rta_10510  lpd; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rta_14670  gcvH; candidate glycine cleavage system H protein [KO:K02437]
Rta_27120  TsaR [KO:K00042] [EC:1.1.1.60]
Rta_32530  ttuD; candidate hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rta_05880  ttuC; Candidate Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rta_24470  Candidate tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rta_11350  eda; candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2-dehydro-3-deoxyphosphogluconate aldolase (Phospho-2-dehydro-3-deoxygluconate aldolase) [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Rta_30510  fdhF; candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) [KO:K00123] [EC:1.17.1.9]
Rta_30590  formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein [KO:K00123] [EC:1.17.1.9]
Rta_30600  NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein [KO:K22515] [EC:1.17.1.9]
Rta_30500  fdhB; candidate formate dehydrogenase iron-sulfur subunit [KO:K00124]
Rta_30480  candidate formate dehydrogenase subunit C precursor [KO:K00127]
Rta_12730  conserved hypothetical protein [KO:K01432] [EC:3.5.1.9]
Rta_02350  Candidate Esterase/lipase [KO:K01432] [EC:3.5.1.9]
Rta_27910  Conserved hypothetical protein [KO:K07130] [EC:3.5.1.9]
Rta_36630  purU; Candidate formyltetrahydrofolate deformylase (Formyl-FH(4) hydrolase) [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rta00010  Glycolysis / Gluconeogenesis
rta00020  Citrate cycle (TCA cycle)
rta00030  Pentose phosphate pathway
rta00053  Ascorbate and aldarate metabolism
rta00071  Fatty acid degradation
rta00230  Purine metabolism
rta00250  Alanine, aspartate and glutamate metabolism
rta00260  Glycine, serine and threonine metabolism
rta00620  Pyruvate metabolism
rta00710  Carbon fixation by Calvin cycle
rta00750  Vitamin B6 metabolism
rta00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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