KEGG   PATHWAY: rtr00630
Entry
rtr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium tropici
Class
Metabolism; Carbohydrate metabolism
Pathway map
rtr00630  Glyoxylate and dicarboxylate metabolism
rtr00630

Module
rtr_M00012  Glyoxylate cycle [PATH:rtr00630]
rtr_M00621  Glycine cleavage system [PATH:rtr00630]
rtr_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rtr00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium tropici [GN:rtr]
Gene
RTCIAT899_PB02170  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RTCIAT899_PC03535  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RTCIAT899_CH18625  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RTCIAT899_CH16250  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
RTCIAT899_CH00280  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
RTCIAT899_CH16845  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
RTCIAT899_CH08560  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RTCIAT899_CH09250  citrate synthase protein [KO:K01647] [EC:2.3.3.1]
RTCIAT899_CH09255  citrate synthase [KO:K01647] [EC:2.3.3.1]
RTCIAT899_PB02150  pcsA; citrate synthase [KO:K01647] [EC:2.3.3.1]
RTCIAT899_CH17090  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RTCIAT899_CH18015  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RTCIAT899_PB01930  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RTCIAT899_CH03055  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RTCIAT899_CH17580  acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
RTCIAT899_CH18010  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RTCIAT899_CH06970  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RTCIAT899_CH09515  methylcrotonoyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
RTCIAT899_CH09550  propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RTCIAT899_CH05090  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RTCIAT899_CH05095  methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
RTCIAT899_CH03845  glycolate oxidase subunit D protein [KO:K00104] [EC:1.1.99.14]
RTCIAT899_CH03850  glycolate oxidase subunit E protein [KO:K11472] [EC:1.1.99.14]
RTCIAT899_CH03855  glycolate oxidase subunit F protein [KO:K11473] [EC:1.1.99.14]
RTCIAT899_CH00720  glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
RTCIAT899_CH01135  hydroxyacid dehydrogenase NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RTCIAT899_PC08325  putative 2-hydroxyacid dehydrogenase GhrA [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RTCIAT899_CH09565  putative hydrolase [KO:K01091] [EC:3.1.3.18]
RTCIAT899_CH10185  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RTCIAT899_CH04055  putative phosphatase [KO:K01091] [EC:3.1.3.18]
RTCIAT899_CH05595  gamma-glutamylputrescine synthetase [KO:K01915] [EC:6.3.1.2]
RTCIAT899_CH03000  glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
RTCIAT899_CH03535  glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
RTCIAT899_CH11555  glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
RTCIAT899_CH08920  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
RTCIAT899_PC09295  glnT; glutamine synthetase, type III [KO:K01915] [EC:6.3.1.2]
RTCIAT899_CH06460  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RTCIAT899_CH09595  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RTCIAT899_CH09585  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
RTCIAT899_PC09240  glycine cleavage T protein [KO:K00605] [EC:2.1.2.10]
RTCIAT899_PC09280  glycine cleavage T protein [KO:K00605] [EC:2.1.2.10]
RTCIAT899_CH16795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RTCIAT899_CH08615  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RTCIAT899_CH09590  gcvH; glycine cleavage system H protein [KO:K02437]
RTCIAT899_PC01470  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
RTCIAT899_CH00435  hydroxypyruvate isomerase protein [KO:K01816] [EC:5.3.1.22]
RTCIAT899_PC01465  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RTCIAT899_PC01460  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RTCIAT899_CH10335  NAD-binding 6-phosphogluconate dehydrogenase [KO:K00042] [EC:1.1.1.60]
RTCIAT899_PC05390  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RTCIAT899_CH14115  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RTCIAT899_CH14335  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RTCIAT899_PC01455  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RTCIAT899_PC08340  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RTCIAT899_CH15490  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RTCIAT899_CH16635  NAD-dependent formate dehydrogenase, delta subunit protein [KO:K00126] [EC:1.17.1.9]
RTCIAT899_CH16645  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
RTCIAT899_CH16650  NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
RTCIAT899_CH16655  NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
RTCIAT899_PC06625  hypothetical protein [KO:K01432] [EC:3.5.1.9]
RTCIAT899_CH01450  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RTCIAT899_PC09290  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rtr00010  Glycolysis / Gluconeogenesis
rtr00020  Citrate cycle (TCA cycle)
rtr00030  Pentose phosphate pathway
rtr00053  Ascorbate and aldarate metabolism
rtr00071  Fatty acid degradation
rtr00230  Purine metabolism
rtr00250  Alanine, aspartate and glutamate metabolism
rtr00260  Glycine, serine and threonine metabolism
rtr00620  Pyruvate metabolism
rtr00710  Carbon fixation by Calvin cycle
rtr00750  Vitamin B6 metabolism
rtr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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