KEGG   PATHWAY: rtu00630
Entry
rtu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium tumorigenes
Class
Metabolism; Carbohydrate metabolism
Pathway map
rtu00630  Glyoxylate and dicarboxylate metabolism
rtu00630

Module
rtu_M00621  Glycine cleavage system [PATH:rtu00630]
rtu_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rtu00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium tumorigenes [GN:rtu]
Gene
PR017_15425  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PR017_24570  malate synthase G [KO:K01638] [EC:2.3.3.9]
PR017_14320  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PR017_06225  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PR017_06680  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
PR017_06685  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
PR017_14585  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PR017_15005  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PR017_00930  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PR017_15000  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PR017_05055  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PR017_07240  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
PR017_07270  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PR017_03050  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PR017_03055  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
PR017_24560  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
PR017_24555  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
PR017_24550  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
PR017_13395  catalase [KO:K03781] [EC:1.11.1.6]
PR017_01680  katA; catalase [KO:K03781] [EC:1.11.1.6]
PR017_13135  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
PR017_26135  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PR017_28165  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PR017_01905  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
PR017_07285  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PR017_07875  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PR017_26725  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
PR017_01450  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PR017_03795  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PR017_06520  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PR017_09440  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PR017_04610  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PR017_07320  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PR017_16595  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
PR017_16730  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
PR017_07310  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PR017_14275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PR017_06280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PR017_07315  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PR017_05405  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
PR017_27520  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
PR017_19025  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
PR017_11475  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PR017_16605  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PR017_28180  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PR017_12410  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PR017_16760  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PR017_25585  formamidase [KO:K01455] [EC:3.5.1.49]
PR017_26785  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rtu00010  Glycolysis / Gluconeogenesis
rtu00020  Citrate cycle (TCA cycle)
rtu00030  Pentose phosphate pathway
rtu00053  Ascorbate and aldarate metabolism
rtu00071  Fatty acid degradation
rtu00230  Purine metabolism
rtu00250  Alanine, aspartate and glutamate metabolism
rtu00260  Glycine, serine and threonine metabolism
rtu00620  Pyruvate metabolism
rtu00750  Vitamin B6 metabolism
rtu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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