KEGG   PATHWAY: rub00020
Entry
rub00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rubrobacter tropicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rub00020  Citrate cycle (TCA cycle)
rub00020

Module
rub_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rub00020]
rub_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rub00020]
rub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rub00020]
Other DBs
GO: 0006099
Organism
Rubrobacter tropicus [GN:rub]
Gene
GBA63_11785  citrate synthase [KO:K01647] [EC:2.3.3.1]
GBA63_03260  citrate synthase [KO:K01647] [EC:2.3.3.1]
GBA63_03265  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
GBA63_15360  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GBA63_13590  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GBA63_09540  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GBA63_03475  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GBA63_03480  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GBA63_03320  FAD-binding protein [KO:K00382] [EC:1.8.1.4]
GBA63_09445  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GBA63_09450  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GBA63_00070  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
GBA63_00075  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GBA63_15270  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
GBA63_15275  TRZ/ATZ family protein [KO:K01678] [EC:4.2.1.2]
GBA63_16030  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
GBA63_01425  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GBA63_15180  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GBA63_05140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GBA63_05145  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GBA63_04430  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
GBA63_05150  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rub00010  Glycolysis / Gluconeogenesis
rub00053  Ascorbate and aldarate metabolism
rub00061  Fatty acid biosynthesis
rub00071  Fatty acid degradation
rub00190  Oxidative phosphorylation
rub00220  Arginine biosynthesis
rub00250  Alanine, aspartate and glutamate metabolism
rub00280  Valine, leucine and isoleucine degradation
rub00350  Tyrosine metabolism
rub00470  D-Amino acid metabolism
rub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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