KEGG   PATHWAY: sabi00630
Entry
sabi00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sphingomonas abietis
Class
Metabolism; Carbohydrate metabolism
Pathway map
sabi00630  Glyoxylate and dicarboxylate metabolism
sabi00630

Module
sabi_M00012  Glyoxylate cycle [PATH:sabi00630]
sabi_M00621  Glycine cleavage system [PATH:sabi00630]
sabi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sabi00630]
Other DBs
GO: 0046487 0043648
Organism
Sphingomonas abietis [GN:sabi]
Gene
PBT88_04810  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PBT88_11655  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PBT88_03120  malate synthase G [KO:K01638] [EC:2.3.3.9]
PBT88_05310  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PBT88_05940  citrate synthase [KO:K01647] [EC:2.3.3.1]
PBT88_18890  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PBT88_06490  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PBT88_12400  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PBT88_13260  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PBT88_16215  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
PBT88_19230  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PBT88_13255  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PBT88_13230  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
PBT88_13265  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PBT88_13250  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PBT88_08120  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
PBT88_08505  catalase [KO:K03781] [EC:1.11.1.6]
PBT88_14365  catalase [KO:K03781] [EC:1.11.1.6]
PBT88_13570  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PBT88_03880  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PBT88_13485  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PBT88_13515  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PBT88_18765  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PBT88_05165  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PBT88_05085  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
PBT88_05090  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
PBT88_05070  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PBT88_05335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBT88_14410  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBT88_04090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBT88_05075  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PBT88_05455  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
PBT88_03195  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PBT88_05630  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PBT88_02895  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
PBT88_10570  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
PBT88_10575  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sabi00010  Glycolysis / Gluconeogenesis
sabi00020  Citrate cycle (TCA cycle)
sabi00030  Pentose phosphate pathway
sabi00053  Ascorbate and aldarate metabolism
sabi00071  Fatty acid degradation
sabi00230  Purine metabolism
sabi00250  Alanine, aspartate and glutamate metabolism
sabi00260  Glycine, serine and threonine metabolism
sabi00620  Pyruvate metabolism
sabi00710  Carbon fixation by Calvin cycle
sabi00750  Vitamin B6 metabolism
sabi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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