KEGG   PATHWAY: salp00630
Entry
salp00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Salvelinus sp. IW2-2015 (Arctic char)
Class
Metabolism; Carbohydrate metabolism
Pathway map
salp00630  Glyoxylate and dicarboxylate metabolism
salp00630

Module
salp_M00621  Glycine cleavage system [PATH:salp00630]
Other DBs
GO: 0046487 0043648
Organism
Salvelinus sp. IW2-2015 (Arctic char) [GN:salp]
Gene
111966292  acetyl-coenzyme A synthetase, cytoplasmic [KO:K01895] [EC:6.2.1.1]
111951869  acss1; acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
111976981  acetyl-coenzyme A synthetase, cytoplasmic isoform X1 [KO:K01895] [EC:6.2.1.1]
112076948  LOW QUALITY PROTEIN: malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111959442  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
111950629  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111981395  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111970231  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111976366  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111966711  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111977741  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
112069944  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
112080051  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111967901  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
111954341  aco1; LOW QUALITY PROTEIN: cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
112072163  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111960185  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
111973361  acat2; acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
111950695  acat1; acetyl-CoA acetyltransferase, mitochondrial [KO:K00626] [EC:2.3.1.9]
111974749  mcee; methylmalonyl-CoA epimerase, mitochondrial isoform X1 [KO:K05606] [EC:5.1.99.1]
112067775  methylmalonyl-CoA epimerase, mitochondrial-like isoform X1 [KO:K05606] [EC:5.1.99.1]
111955256  LOW QUALITY PROTEIN: propionyl-CoA carboxylase beta chain, mitochondrial [KO:K01966] [EC:6.4.1.3 2.1.3.15]
111954328  mut; methylmalonyl-CoA mutase, mitochondrial [KO:K01847] [EC:5.4.99.2]
111963365  hao1; hydroxyacid oxidase 1 isoform X2 [KO:K11517] [EC:1.1.3.15]
111959543  hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
111978731  hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
111982414  catalase [KO:K03781] [EC:1.11.1.6]
111960558  catalase [KO:K03781] [EC:1.11.1.6]
111962004  catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
111967403  glyoxylate reductase/hydroxypyruvate reductase isoform X1 [KO:K00049] [EC:1.1.1.79 1.1.1.81]
111965623  glyoxylate reductase/hydroxypyruvate reductase [KO:K00049] [EC:1.1.1.79 1.1.1.81]
111967928  pgp; glycerol-3-phosphate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112070392  LOW QUALITY PROTEIN: serine--pyruvate aminotransferase, mitochondrial-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111956728  serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111956706  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
111979495  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
111975663  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
111961094  glutamine synthetase-like isoform X1 [KO:K01915] [EC:6.3.1.2]
111972373  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
112069557  LOW QUALITY PROTEIN: serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
111957724  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
111974182  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
111966272  LOW QUALITY PROTEIN: aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
111976930  aminomethyltransferase, mitochondrial isoform X1 [KO:K00605] [EC:2.1.2.10]
111971987  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111962178  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
111974122  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
111962527  glycine cleavage system H protein, mitochondrial [KO:K02437]
111953054  glycine cleavage system H protein, mitochondrial [KO:K02437]
111969364  glycine cleavage system H protein, mitochondrial isoform X1 [KO:K02437]
112068507  hyi; putative hydroxypyruvate isomerase isoform X1 [KO:K01816] [EC:5.3.1.22]
111969973  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
112079381  hoga1; 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [KO:K18123] [EC:4.1.3.16]
112074526  afmid; LOW QUALITY PROTEIN: kynurenine formamidase [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
salp00010  Glycolysis / Gluconeogenesis
salp00020  Citrate cycle (TCA cycle)
salp00030  Pentose phosphate pathway
salp00053  Ascorbate and aldarate metabolism
salp00071  Fatty acid degradation
salp00230  Purine metabolism
salp00250  Alanine, aspartate and glutamate metabolism
salp00260  Glycine, serine and threonine metabolism
salp00620  Pyruvate metabolism
salp00750  Vitamin B6 metabolism
salp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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