KEGG   PATHWAY: sauk00020
Entry
sauk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus ST228/15532 (MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sauk00020  Citrate cycle (TCA cycle)
sauk00020

Module
sauk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sauk00020]
sauk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sauk00020]
sauk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sauk00020]
sauk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sauk00020]
sauk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sauk00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus ST228/15532 (MRSA) [GN:sauk]
Gene
SAI3T3_1012350  citZ; Methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
SAI3T3_1009700  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SAI3T3_1012340  citC; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SAI3T3_1010220  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAI3T3_1010210  odhB; Dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAI3T3_1011040  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAI3T3_1007800  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAI3T3_1009280  Pyruvate ferredoxin oxidoreductase alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAI3T3_1009290  Putative uncharacterized protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAI3T3_1008900  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SAI3T3_1008890  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SAI3T3_1008180  Putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAI3T3_1008190  Putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SAI3T3_1008170  sdhC; Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
SAI3T3_1013700  Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SAI3T3_1017530  mqo1; Probable malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
SAI3T3_1019470  mqo2; Probable malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
SAI3T3_1007930  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAI3T3_1013120  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SAI3T3_1007770  Putative pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SAI3T3_1007780  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SAI3T3_1007790  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sauk00010  Glycolysis / Gluconeogenesis
sauk00053  Ascorbate and aldarate metabolism
sauk00061  Fatty acid biosynthesis
sauk00071  Fatty acid degradation
sauk00190  Oxidative phosphorylation
sauk00220  Arginine biosynthesis
sauk00250  Alanine, aspartate and glutamate metabolism
sauk00280  Valine, leucine and isoleucine degradation
sauk00350  Tyrosine metabolism
sauk00470  D-Amino acid metabolism
sauk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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