KEGG   PATHWAY: scap03430
Entry
scap03430                   Pathway                                
Name
Mismatch repair - Staphylococcus capitis subsp. capitis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
scap03430  Mismatch repair
scap03430

Other DBs
GO: 0006298
Organism
Staphylococcus capitis subsp. capitis [GN:scap]
Gene
AYP1020_0605  mutS_1; DNA mismatch repair protein MutS [KO:K03555]
AYP1020_0469  mutS2; MutS2 protein [KO:K07456]
AYP1020_0606  mutL; DNA mismatch repair protein MutL [KO:K03572]
AYP1020_1183  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
AYP1020_0822  xseA; Exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
AYP1020_0821  xseB; Exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
AYP1020_0927  recJ; Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
AYP1020_0308  ssb_1; Helix-destabilizing protein [KO:K03111]
AYP1020_2131  ssb_2; Helix-destabilizing protein [KO:K03111]
AYP1020_1283  ssbB; Single-stranded DNA-binding protein SsbB [KO:K03111]
AYP1020_0983  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AYP1020_0573  polC_1; DNA polymerase III PolC-type [KO:K03763] [EC:2.7.7.7]
AYP1020_2062  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AYP1020_2206  dnaX_1; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AYP1020_0884  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AYP1020_2216  dnaX_2; DNA polymerase III subunit gamma/tau [KO:K02341] [EC:2.7.7.7]
AYP1020_1172  polC_2; DNA polymerase III PolC-type [KO:K02342] [EC:2.7.7.7]
AYP1020_1182  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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