KEGG   PATHWAY: scl00240
Entry
scl00240                    Pathway                                
Name
Pyrimidine metabolism - Sorangium cellulosum So ce56
Class
Metabolism; Nucleotide metabolism
Pathway map
scl00240  Pyrimidine metabolism
scl00240

Module
scl_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:scl00240]
scl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:scl00240]
scl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scl00240]
Other DBs
GO: 0006220 0006213
Organism
Sorangium cellulosum So ce56 [GN:scl]
Gene
sce2399  carA1; Carbamoyl-phosphate synthase [KO:K01955] [EC:6.3.5.5]
sce2400  carA2; Carbamoyl-phosphate synthase [KO:K01956] [EC:6.3.5.5]
sce3822  pyrB; Family membership [KO:K00609] [EC:2.1.3.2]
sce4269  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
sce4402  pyrD; Family membership [KO:K00254] [EC:1.3.5.2]
sce0446  pyrE; putative orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
sce3701  pyrF; putative Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
sce7259  pyrH; Phosphotransfease with a phosphate group as acceptor [KO:K09903] [EC:2.7.4.22]
sce2949  ndk; putative Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
sce4803  mazG; hypothetical protein [KO:K04765] [EC:3.6.1.9]
sce5934  maf; Maf-like protein [KO:K06287] [EC:3.6.1.-]
sce7239  pyrG3; CTP synthase [KO:K01937] [EC:6.3.4.2]
sce5618  pyrG2; CTP synthase [KO:K01937] [EC:6.3.4.2]
sce6877  cmk; Family membership [KO:K00945] [EC:2.7.4.25]
sce7039  putative 5'-nucleotidase family protein [KO:K01081] [EC:3.1.3.5]
sce8819  hypothetical protein [KO:K01081] [EC:3.1.3.5]
sce5763  hypothetical protein predicted by Glimmer/Critica [KO:K11751] [EC:3.1.3.5 3.6.1.45]
sce1233  ushA; puitative 5'-nucleotidase family protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
sce2984  surE1; Acid phosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
sce4830  Protein of unknown function DUF1255 [KO:K09913] [EC:2.4.2.1 2.4.2.2]
sce2468  hypothetical protein predicted by Glimmer/Critica [KO:K00761] [EC:2.4.2.9]
sce3821  pyrR; putative Pyrimidine operon attenuation protein / Uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
sce6742  hypothetical protein [KO:K16329] [EC:4.2.1.70]
sce5863  cdd; putative Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
sce3875  nrdA2; Ribonucleoside-diphosphate reductase [KO:K00525] [EC:1.17.4.1]
sce0379  nrdA1; putative Ribonucleoside-diphosphate reductase [KO:K00525] [EC:1.17.4.1]
sce3876  nrdB; Ribonucleotide-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
sce9015  comEB; dCMP deaminase [KO:K01493] [EC:3.5.4.12]
sce0834  tmk; putative Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
sce3429  dut; dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
sce2436  pdp; Pyrimidine-nucleoside phosphorylase [KO:K00758] [EC:2.4.2.4]
sce6398  gltB2; Glutamate synthase [NADPH] [KO:K17722] [EC:1.3.1.1]
sce6397  yeiA; Dihydropyrimidine dehydrogenase [KO:K17723] [EC:1.3.1.1]
sce6399  dht; Dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
sce6400  unnamed protein product; Specificity unclear [KO:K01431] [EC:3.5.1.6]
sce8093  putative oxidoreductase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
scl00030  Pentose phosphate pathway
scl00220  Arginine biosynthesis
scl00250  Alanine, aspartate and glutamate metabolism
scl00280  Valine, leucine and isoleucine degradation
scl00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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