KEGG   PATHWAY: sef00030
Entry
sef00030                    Pathway                                
Name
Pentose phosphate pathway - Salmonella enterica subsp. enterica serovar Typhimurium 798
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sef00030  Pentose phosphate pathway
sef00030

Module
sef_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sef00030]
sef_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sef00030]
sef_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sef00030]
sef_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sef00030]
sef_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sef00030]
sef_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sef00030]
sef_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:sef00030]
sef_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:sef00030]
Other DBs
GO: 0006098
Organism
Salmonella enterica subsp. enterica serovar Typhimurium 798 [GN:sef]
Gene
UMN798_4579  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
UMN798_2991  putative glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
UMN798_1987  zwf; glucose 6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
UMN798_0851  hypothetical protein [KO:K07404] [EC:3.1.1.31]
UMN798_2248  gnd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
UMN798_4423  putative ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
UMN798_3785  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
UMN798_2670  tktB; transketolase 2 [KO:K00615] [EC:2.2.1.1]
UMN798_2527  putative transketolase [KO:K00615] [EC:2.2.1.1]
UMN798_3344  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
UMN798_2526  putative transketolase [KO:K00615] [EC:2.2.1.1]
UMN798_0006  talB; transaldolase B [KO:K00616] [EC:2.2.1.2]
UMN798_2669  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
UMN798_3329  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
UMN798_2989  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
UMN798_2990  hxlB; 6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
UMN798_4940  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
UMN798_4122  putative carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
UMN798_4221  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
UMN798_4942  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
UMN798_0755  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
UMN798_1874  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
UMN798_1986  edd; 6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
UMN798_1985  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
UMN798_4095  hypothetical protein [KO:K17463] [EC:4.1.2.14]
UMN798_0188  gcd; glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
UMN798_3960  yiaE; putative 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
UMN798_3845  gntK; putative gluconokinase [KO:K00851] [EC:2.7.1.12]
UMN798_4855  idnK; thermosensitive gluconokinase [KO:K00851] [EC:2.7.1.12]
UMN798_3919  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
UMN798_4100  putative PTS system protein [KO:K17464] [EC:2.7.1.203]
UMN798_4099  putative PTS system protein [KO:K17465] [EC:2.7.1.203]
UMN798_4098  putative PTS system protein [KO:K17466]
UMN798_4097  putative PTS system protein [KO:K17467]
UMN798_4096  putative transferase [KO:K17468] [EC:4.3.1.29]
UMN798_2312  fbaB; fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
UMN798_3336  fba; fructose 1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
UMN798_4780  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
UMN798_4428  glpX; putative glycerol metabolic protein [KO:K02446] [EC:3.1.3.11]
UMN798_4406  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
UMN798_1383  pfkB; 6-phosphofructokinase isozyme [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sef00010  Glycolysis / Gluconeogenesis
sef00040  Pentose and glucuronate interconversions
sef00052  Galactose metabolism
sef00230  Purine metabolism
sef00240  Pyrimidine metabolism
sef00340  Histidine metabolism
sef00630  Glyoxylate and dicarboxylate metabolism
sef00750  Vitamin B6 metabolism
KO pathway
ko00030   
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