KEGG   PATHWAY: senn00030
Entry
senn00030                   Pathway                                
Name
Pentose phosphate pathway - Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
senn00030  Pentose phosphate pathway
senn00030

Module
senn_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:senn00030]
senn_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:senn00030]
senn_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:senn00030]
senn_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:senn00030]
senn_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:senn00030]
senn_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:senn00030]
Other DBs
GO: 0006098
Organism
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1 [GN:senn]
Gene
SN31241_5380  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SN31241_29850  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SN31241_17840  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
SN31241_31840  6-phosphogluconate dehydrogenase,decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SN31241_4040  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SN31241_46080  epimerase lsrE [KO:K01783] [EC:5.1.3.1]
SN31241_35790  Transketolase 2 [KO:K00615] [EC:2.2.1.1]
SN31241_34460  Transketolase domain protein [KO:K00615] [EC:2.2.1.1]
SN31241_34470  Transketolase [KO:K00615] [EC:2.2.1.1]
SN31241_41980  Transketolase 2 [KO:K00615] [EC:2.2.1.1]
SN31241_9820  Transaldolase 1 [KO:K00616] [EC:2.2.1.2]
SN31241_35780  Transaldolase [KO:K00616] [EC:2.2.1.2]
SN31241_41770  Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
SN31241_9420  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SN31241_830  DeoK [KO:K00852] [EC:2.7.1.15]
SN31241_48270  Ribokinase [KO:K00852] [EC:2.7.1.15]
SN31241_9440  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SN31241_16980  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SN31241_28630  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SN31241_29840  6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SN31241_29830  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SN31241_1120  hypothetical protein [KO:K17463] [EC:4.1.2.14]
SN31241_11580  Quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
SN31241_2370  reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SN31241_3510  Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
SN31241_8550  Thermosensitive gluconokinase [KO:K00851] [EC:2.7.1.12]
SN31241_2760  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
SN31241_1070  PTS system fructose IIA component [KO:K17464] [EC:2.7.1.203]
SN31241_1080  PTS system sorbose subfamily IIB component [KO:K17465] [EC:2.7.1.203]
SN31241_1090  Phosphotransferase [KO:K17466]
SN31241_1100  PTS system mannose/fructose/sorbose family IID component [KO:K17467]
SN31241_1110  Pyridoxal phosphate-dependent enzyme [KO:K17468] [EC:4.3.1.29]
SN31241_32520  Fructose-bisphosphate aldolase class 1 [KO:K11645] [EC:4.1.2.13]
SN31241_41840  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
SN31241_8040  Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
SN31241_46030  Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
SN31241_41940  Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
SN31241_46250  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
SN31241_24010  6-phosphofructokinase isozyme 2 [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
senn00010  Glycolysis / Gluconeogenesis
senn00040  Pentose and glucuronate interconversions
senn00052  Galactose metabolism
senn00230  Purine metabolism
senn00240  Pyrimidine metabolism
senn00340  Histidine metabolism
senn00630  Glyoxylate and dicarboxylate metabolism
senn00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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