KEGG   PATHWAY: serf00630
Entry
serf00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Serratia sp. FS14
Class
Metabolism; Carbohydrate metabolism
Pathway map
serf00630  Glyoxylate and dicarboxylate metabolism
serf00630

Module
serf_M00012  Glyoxylate cycle [PATH:serf00630]
serf_M00621  Glycine cleavage system [PATH:serf00630]
Other DBs
GO: 0046487 0043648
Organism
Serratia sp. FS14 [GN:serf]
Gene
L085_05895  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
L085_02550  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
L085_05890  malate synthase [KO:K01638] [EC:2.3.3.9]
L085_06315  hypothetical protein [KO:K00024] [EC:1.1.1.37]
L085_02030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L085_22315  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
L085_15475  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L085_07940  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L085_01405  putative acyltransferase [KO:K00626] [EC:2.3.1.9]
L085_11745  catalase [KO:K03781] [EC:1.11.1.6]
L085_19045  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
L085_04680  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
L085_03035  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
L085_04270  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
L085_09920  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
L085_08370  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
L085_08360  gcvT; glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
L085_03805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
L085_07935  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
L085_08365  glycine cleavage system H protein [KO:K02437]
L085_22995  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
L085_22990  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
L085_22985  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
L085_22975  glycerate kinase II [KO:K00865] [EC:2.7.1.165]
L085_23145  glycerate kinase I [KO:K00865] [EC:2.7.1.165]
L085_08245  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
L085_14920  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L085_05905  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L085_17045  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
L085_04795  formate dehydrogenase-N, alpha subunit [KO:K00123] [EC:1.17.1.9]
L085_04800  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
L085_04805  formate dehydrogenase-O Fe-S subunit [KO:K00124]
L085_04810  formate dehydrogenase-O subunit gamma [KO:K00127]
L085_16775  putative esterase [KO:K01432] [EC:3.5.1.9]
L085_13080  esterase/lipase-like protein [KO:K01432] [EC:3.5.1.9]
L085_15180  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
L085_18285  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
serf00010  Glycolysis / Gluconeogenesis
serf00020  Citrate cycle (TCA cycle)
serf00030  Pentose phosphate pathway
serf00053  Ascorbate and aldarate metabolism
serf00071  Fatty acid degradation
serf00230  Purine metabolism
serf00250  Alanine, aspartate and glutamate metabolism
serf00260  Glycine, serine and threonine metabolism
serf00620  Pyruvate metabolism
serf00710  Carbon fixation by Calvin cycle
serf00750  Vitamin B6 metabolism
serf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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