KEGG   PATHWAY: sfn03430
Entry
sfn03430                    Pathway                                
Name
Mismatch repair - Shigella flexneri 2003036
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
sfn03430  Mismatch repair
sfn03430

Other DBs
GO: 0006298
Organism
Shigella flexneri 2003036 [GN:sfn]
Gene
SFy_3915  DNA mismatch repair protein MutS [KO:K03555]
SFy_6206  DNA mismatch repair protein mutL [KO:K03572]
SFy_4048  DNA mismatch repair protein mutH [KO:K03573]
SFy_5550  DNA-dependent helicase II [KO:K03657] [EC:5.6.2.4]
SFy_2955  SbcB [KO:K01141] [EC:3.1.11.1]
SFy_3635  exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
SFy_0447  Exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
SFy_2657  exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
SFy_4099  RecJ [KO:K07462] [EC:3.1.-.-]
SFy_5958  single-stranded DNA-binding protein [KO:K03111]
SFy_0236  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
SFy_5360  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
SFy_0524  DnaX [KO:K02343] [EC:2.7.7.7]
SFy_0873  HolA [KO:K02340] [EC:2.7.7.7]
SFy_1589  HolB [KO:K02341] [EC:2.7.7.7]
SFy_0274  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
SFy_2655  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
SFy_6072  HolC [KO:K02339] [EC:2.7.7.7]
SFy_6320  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
SFy_3502  DNA ligase [KO:K01972] [EC:6.5.1.2]
SFy_5253  NAD-dependent DNA ligase adenylation domain protein [KO:K01972] [EC:6.5.1.2]
SFy_4838  Dam methyltransferase with SUUR [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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