KEGG   PATHWAY: shs00020
Entry
shs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Stereum hirsutum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shs00020  Citrate cycle (TCA cycle)
shs00020

Module
shs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shs00020]
shs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:shs00020]
shs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shs00020]
shs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shs00020]
Other DBs
GO: 0006099
Organism
Stereum hirsutum [GN:shs]
Gene
STEHIDRAFT_127912  citrate synthase [KO:K01647] [EC:2.3.3.1]
STEHIDRAFT_166375  citrate synthase [KO:K01647] [EC:2.3.3.1]
STEHIDRAFT_72555  peroxysomal citrate synthase [KO:K01647] [EC:2.3.3.1]
STEHIDRAFT_168362  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
STEHIDRAFT_68582  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
STEHIDRAFT_121051  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STEHIDRAFT_95675  mitochondrial NAD-dependent isocitrate dehydrogenase subunit 2 precursor [KO:K00030] [EC:1.1.1.41]
STEHIDRAFT_146164  hypothetical protein [KO:K00030] [EC:1.1.1.41]
STEHIDRAFT_168902  2-oxoglutarate dehydrogenase complex E1 component mitochondrial precursor [KO:K00164] [EC:1.2.4.2]
STEHIDRAFT_109302  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
STEHIDRAFT_87609  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STEHIDRAFT_143915  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
STEHIDRAFT_144091  succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
STEHIDRAFT_93217  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
STEHIDRAFT_123376  succinate dehydrogenase and fumarate r [KO:K00235] [EC:1.3.5.1]
STEHIDRAFT_144312  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
STEHIDRAFT_60709  hypothetical protein [KO:K00237]
STEHIDRAFT_117634  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
STEHIDRAFT_80780  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
STEHIDRAFT_61502  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
STEHIDRAFT_105623  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
STEHIDRAFT_141321  ATP-utilizing phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
STEHIDRAFT_91950  pyruvate dehydrogenase e1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
STEHIDRAFT_54086  Thiamin diphosphate-binding protein [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shs00010  Glycolysis / Gluconeogenesis
shs00053  Ascorbate and aldarate metabolism
shs00061  Fatty acid biosynthesis
shs00062  Fatty acid elongation
shs00071  Fatty acid degradation
shs00190  Oxidative phosphorylation
shs00220  Arginine biosynthesis
shs00250  Alanine, aspartate and glutamate metabolism
shs00280  Valine, leucine and isoleucine degradation
shs00350  Tyrosine metabolism
shs00470  D-Amino acid metabolism
shs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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