KEGG   PATHWAY: sino00030
Entry
sino00030                   Pathway                                
Name
Pentose phosphate pathway - Sinorhizobium sp. CCBAU 05631
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sino00030  Pentose phosphate pathway
sino00030

Module
sino_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sino00030]
sino_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sino00030]
sino_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sino00030]
sino_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sino00030]
sino_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sino00030]
sino_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sino00030]
Other DBs
GO: 0006098
Organism
Sinorhizobium sp. CCBAU 05631 [GN:sino]
Gene
SS05631_c01190  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SS05631_a42720  Glucose-6-phosphate isomerase, archaeal [KO:K06859] [EC:5.3.1.9]
SS05631_c03660  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SS05631_c03650  6-phosphogluconolactonase, eukaryotic type [KO:K01057] [EC:3.1.1.31]
SS05631_c19650  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
SS05631_c15940  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SS05631_a42480  Transketolase, C-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_a42490  Transketolase, N-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_c32140  Transketolase [KO:K00615] [EC:2.2.1.1]
SS05631_a48140  Transketolase, N-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_a48150  Transketolase, C-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_b52020  Transketolase, C-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_b52030  Transketolase, N-terminal section [KO:K00615] [EC:2.2.1.1]
SS05631_c30250  Transaldolase [KO:K00616] [EC:2.2.1.2]
SS05631_c34850  Transaldolase [KO:K00616] [EC:2.2.1.2]
SS05631_c18600  Ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
SS05631_c20830  Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SS05631_c17060  Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
SS05631_b58850  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SS05631_c00580  Ribokinase [KO:K00852] [EC:2.7.1.15]
SS05631_b58820  Ribokinase [KO:K00852] [EC:2.7.1.15]
SS05631_c38920  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SS05631_c33250  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SS05631_c13920  Phosphoglucosamine mutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SS05631_b58000  Phosphoglucosamine mutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SS05631_b58420  ATP-binding protein phnN [KO:K05774] [EC:2.7.4.23]
SS05631_c24180  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SS05631_c03640  Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SS05631_c27380  4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SS05631_c07150  Glucose dehydrogenase, PQQ-dependent [KO:K00117] [EC:1.1.5.2]
SS05631_b52480  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SS05631_b63520  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
SS05631_b63560  Gluconokinase [KO:K00851] [EC:2.7.1.12]
SS05631_c24760  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
SS05631_b54300  D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
SS05631_c37300  D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
SS05631_c32180  Fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
SS05631_b58230  Fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
SS05631_c22640  Pyrophosphate-dependent fructose 6-phosphate-1-kinase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sino00010  Glycolysis / Gluconeogenesis
sino00040  Pentose and glucuronate interconversions
sino00052  Galactose metabolism
sino00230  Purine metabolism
sino00240  Pyrimidine metabolism
sino00340  Histidine metabolism
sino00630  Glyoxylate and dicarboxylate metabolism
sino00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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