KEGG   PATHWAY: sjn00030
Entry
sjn00030                    Pathway                                
Name
Pentose phosphate pathway - Streptomyces janthinus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sjn00030  Pentose phosphate pathway
sjn00030

Module
sjn_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sjn00030]
sjn_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sjn00030]
sjn_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sjn00030]
sjn_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sjn00030]
Other DBs
GO: 0006098
Organism
Streptomyces janthinus [GN:sjn]
Gene
RI060_32450  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
RI060_06415  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
RI060_32525  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RI060_06405  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RI060_32515  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
RI060_02815  lactonase family protein [KO:K07404] [EC:3.1.1.31]
RI060_21100  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RI060_04355  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RI060_06420  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RI060_35190  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
RI060_32535  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
RI060_06395  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
RI060_07210  transketolase [KO:K00615] [EC:2.2.1.1]
RI060_32530  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
RI060_06400  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
RI060_27835  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
RI060_36565  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
RI060_35990  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
RI060_15110  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
RI060_27155  ribokinase [KO:K00852] [EC:2.7.1.15]
RI060_41635  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
RI060_25110  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
RI060_30180  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RI060_39310  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RI060_10680  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RI060_24215  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
RI060_03280  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RI060_34040  gluconokinase [KO:K00851] [EC:2.7.1.12]
RI060_14810  sugar kinase [KO:K00874] [EC:2.7.1.45]
RI060_28890  sugar kinase [KO:K00874] [EC:2.7.1.45]
RI060_39315  sugar kinase [KO:K00874] [EC:2.7.1.45]
RI060_19155  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
RI060_38740  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
RI060_14400  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
RI060_12535  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
RI060_31355  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
RI060_36625  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sjn00010  Glycolysis / Gluconeogenesis
sjn00040  Pentose and glucuronate interconversions
sjn00052  Galactose metabolism
sjn00230  Purine metabolism
sjn00240  Pyrimidine metabolism
sjn00340  Histidine metabolism
sjn00630  Glyoxylate and dicarboxylate metabolism
sjn00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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