KEGG   PATHWAY: smd00010
Entry
smd00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Sinorhizobium medicae
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smd00010  Glycolysis / Gluconeogenesis
smd00010

Module
smd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:smd00010]
smd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smd00010]
smd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smd00010]
Other DBs
GO: 0006096 0006094
Organism
Sinorhizobium medicae [GN:smd]
Gene
Smed_3369  glucokinase [KO:K00845] [EC:2.7.1.2]
Smed_0109  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Smed_2463  Glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
Smed_2106  phosphofructokinase [KO:K00895] [EC:2.7.1.90]
Smed_3920  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Smed_2654  Fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
Smed_3923  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
Smed_4683  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
Smed_1067  Triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
Smed_2651  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Smed_2653  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Smed_3372  phosphoglycerate mutase 1 family [KO:K01834] [EC:5.4.2.11]
Smed_1072  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Smed_2676  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Smed_0548  pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
Smed_1076  dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
Smed_1077  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Smed_1078  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Smed_2936  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Smed_1081  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Smed_2829  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Smed_3946  Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Smed_1024  Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Smed_2996  Alcohol dehydrogenase zinc-binding domain protein [KO:K13953] [EC:1.1.1.1]
Smed_0584  Alcohol dehydrogenase zinc-binding domain protein [KO:K00001] [EC:1.1.1.1]
Smed_2575  Alcohol dehydrogenase zinc-binding domain protein [KO:K13979] [EC:1.1.1.2]
Smed_4632  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
Smed_5602  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
Smed_5721  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
Smed_2414  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
Smed_2260  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
Smed_3194  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Smed_2522  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Smed_3031  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Smed_5831  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Smed_2743  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [KO:K01835] [EC:5.4.2.2]
Smed_3253  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smd00020  Citrate cycle (TCA cycle)
smd00030  Pentose phosphate pathway
smd00500  Starch and sucrose metabolism
smd00620  Pyruvate metabolism
smd00640  Propanoate metabolism
smd00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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