KEGG   PATHWAY: spao00020
Entry
spao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharomyces paradoxus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spao00020  Citrate cycle (TCA cycle)
spao00020

Module
spao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spao00020]
spao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spao00020]
spao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spao00020]
spao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spao00020]
spao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spao00020]
Other DBs
GO: 0006099
Organism
Saccharomyces paradoxus [GN:spao]
Gene
SPAR_N03040  Cit1 [KO:K01647] [EC:2.3.3.1]
SPAR_P02630  Cit3 [KO:K01647] [EC:2.3.3.1]
SPAR_C00630  Cit2 [KO:K01647] [EC:2.3.3.1]
SPAR_L03220  Aco1 [KO:K01681] [EC:4.2.1.3]
SPAR_L02090  Idp2 [KO:K00031] [EC:1.1.1.42]
SPAR_N02950  Idp3 [KO:K00031] [EC:1.1.1.42]
SPAR_D01680  Idp1 [KO:K00031] [EC:1.1.1.42]
SPAR_N02690  Idh1 [KO:K00030] [EC:1.1.1.41]
SPAR_O02670  Idh2 [KO:K00030] [EC:1.1.1.41]
SPAR_I00450  Kgd1 [KO:K00164] [EC:1.2.4.2]
SPAR_D03570  Kgd2 [KO:K00658] [EC:2.3.1.61]
SPAR_F00440  Lpd1 [KO:K00382] [EC:1.8.1.4]
SPAR_O02720  Lsc1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
SPAR_G04530  Lsc2 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
SPAR_J01610  uncharacterized protein [KO:K00234] [EC:1.3.5.1]
SPAR_K00700  Sdh1 [KO:K00234] [EC:1.3.5.1]
SPAR_L00200  Sdh2 [KO:K00235] [EC:1.3.5.1]
SPAR_K00760  Sdh3 [KO:K00236]
SPAR_M02340  Shh3 [KO:K00236]
SPAR_L02028  Shh4 [KO:K00237]
SPAR_D03840  Sdh4 [KO:K00237]
SPAR_P00170  Fum1 [KO:K01679] [EC:4.2.1.2]
SPAR_K01270  Mdh1 [KO:K00026] [EC:1.1.1.37]
SPAR_O00300  Mdh2 [KO:K00026] [EC:1.1.1.37]
SPAR_D01580  Mdh3 [KO:K00026] [EC:1.1.1.37]
SPAR_G01790  Pyc1 [KO:K01958] [EC:6.4.1.1]
SPAR_B03160  Pyc2 [KO:K01958] [EC:6.4.1.1]
SPAR_K03000  Pck1 [KO:K01610] [EC:4.1.1.49]
SPAR_E02520  Pda1 [KO:K00161] [EC:1.2.4.1]
SPAR_B03180  Pdb1 [KO:K00162] [EC:1.2.4.1]
SPAR_N02390  Lat1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spao00010  Glycolysis / Gluconeogenesis
spao00053  Ascorbate and aldarate metabolism
spao00061  Fatty acid biosynthesis
spao00062  Fatty acid elongation
spao00071  Fatty acid degradation
spao00190  Oxidative phosphorylation
spao00220  Arginine biosynthesis
spao00250  Alanine, aspartate and glutamate metabolism
spao00280  Valine, leucine and isoleucine degradation
spao00350  Tyrosine metabolism
spao00470  D-Amino acid metabolism
spao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system