KEGG   PATHWAY: sply00630
Entry
sply00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Serratia inhibens
Class
Metabolism; Carbohydrate metabolism
Pathway map
sply00630  Glyoxylate and dicarboxylate metabolism
sply00630

Module
sply_M00012  Glyoxylate cycle [PATH:sply00630]
sply_M00621  Glycine cleavage system [PATH:sply00630]
Other DBs
GO: 0046487 0043648
Organism
Serratia inhibens [GN:sply]
Gene
Q5A_023425  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Q5A_001440  acs; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Q5A_023430  aceB; Malate synthase A [KO:K01638] [EC:2.3.3.9]
Q5A_001900  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q5A_006340  gltA_1; Citrate synthase [KO:K01647] [EC:2.3.3.1]
Q5A_013875  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Q5A_021210  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q5A_021615  phbA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Q5A_013320  hypothetical protein [KO:K05606] [EC:5.1.99.1]
Q5A_006245  scpA; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Q5A_017330  katA; Catalase [KO:K03781] [EC:1.11.1.6]
Q5A_009695  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Q5A_000085  ghrB_1; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Q5A_023950  gph; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Q5A_025290  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Q5A_019220  glyA; Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Q5A_020765  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Q5A_020775  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Q5A_016700  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_024805  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_021220  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q5A_020770  gcvH; Glycine cleavage system H protein [KO:K02437]
Q5A_012445  ygbM_2; Putative hydroxypyruvate isomerase YgbM [KO:K01816] [EC:5.3.1.22]
Q5A_003470  garR_1; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Q5A_003475  garK; Glycerate 2-kinase [KO:K00865] [EC:2.7.1.165]
Q5A_010295  aldA; Lactaldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
Q5A_014450  eda_1; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Q5A_023415  eda_2; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Q5A_000205  fdoG_1; Formate dehydrogenase-O major subunit [KO:K00123] [EC:1.17.1.9]
Q5A_000210  fdoG_2; Formate dehydrogenase-O major subunit [KO:K00123] [EC:1.17.1.9]
Q5A_000215  fdoH; Formate dehydrogenase-O iron-sulfur subunit [KO:K00124]
Q5A_000220  fdoI; Formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
Q5A_001530  aes; Acetyl esterase [KO:K01432] [EC:3.5.1.9]
Q5A_016075  hypothetical protein [KO:K01432] [EC:3.5.1.9]
Q5A_014150  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Q5A_010455  hypothetical protein [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sply00010  Glycolysis / Gluconeogenesis
sply00020  Citrate cycle (TCA cycle)
sply00030  Pentose phosphate pathway
sply00053  Ascorbate and aldarate metabolism
sply00071  Fatty acid degradation
sply00230  Purine metabolism
sply00250  Alanine, aspartate and glutamate metabolism
sply00260  Glycine, serine and threonine metabolism
sply00620  Pyruvate metabolism
sply00710  Carbon fixation by Calvin cycle
sply00750  Vitamin B6 metabolism
sply00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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