KEGG   PATHWAY: sra03430
Entry
sra03430                    Pathway                                
Name
Mismatch repair - Serratia sp. AS13
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
sra03430  Mismatch repair
sra03430

Other DBs
GO: 0006298
Organism
Serratia sp. AS13 [GN:sra]
Gene
SerAS13_0757  DNA mismatch repair protein mutS [KO:K03555]
SerAS13_0368  DNA mismatch repair protein mutL [KO:K03572]
SerAS13_4015  DNA mismatch repair protein mutH [KO:K03573]
SerAS13_0146  DNA helicase II [KO:K03657] [EC:5.6.2.4]
SerAS13_3355  Exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
SerAS13_3802  Exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
SerAS13_0993  Exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
SerAS13_1887  Exonuclease RNase T and DNA polymerase III [KO:K10857] [EC:3.1.11.-]
SerAS13_4099  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
SerAS13_4543  single-strand binding protein [KO:K03111]
SerAS13_3965  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
SerAS13_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
SerAS13_1063  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
SerAS13_1177  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
SerAS13_1859  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
SerAS13_0836  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
SerAS13_1891  DNA polymerase II beta subunit [KO:K02345] [EC:2.7.7.7]
SerAS13_3425  DNA polymerase II beta subunit [KO:K02345] [EC:2.7.7.7]
SerAS13_3354  DNA polymerase II beta subunit [KO:K02345] [EC:2.7.7.7]
SerAS13_0495  DNA-directed DNA polymerase [KO:K02339] [EC:2.7.7.7]
SerAS13_0590  DNA-directed DNA polymerase [KO:K02344] [EC:2.7.7.7]
SerAS13_3637  DNA ligase [KO:K01972] [EC:6.5.1.2]
SerAS13_2822  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
SerAS13_4695  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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