KEGG   PATHWAY: sru00020
Entry
sru00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salinibacter ruber DSM 13855
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sru00020  Citrate cycle (TCA cycle)
sru00020

Module
sru_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sru00020]
sru_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sru00020]
sru_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sru00020]
sru_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sru00020]
sru_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sru00020]
Other DBs
GO: 0006099
Organism
Salinibacter ruber DSM 13855 [GN:sru]
Gene
SRU_0488  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SRU_1477  aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
SRU_1866  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SRU_1973  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SRU_1677  putative (NAD+) isocitrate dehydrogenase ^ [KO:K00030] [EC:1.1.1.41]
SRU_1173  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SRU_1603  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SRU_0423  pyruvate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SRU_0424  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SRU_0670  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SRU_1125  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SRU_0485  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SRU_2444  FAD binding domain protein [KO:K00239] [EC:1.3.5.1]
SRU_0484  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SRU_0487  putative succinate dehydrogenase membrane subunit [KO:K00241]
SRU_0486  succinate dehydrogenase, membrane subunit, putative [KO:K00242]
SRU_1611  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SRU_1571  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SRU_0828  pycA; pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
SRU_1835  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SRU_2373  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SRU_1971  Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SRU_1970  pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
SRU_1969  dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SRU_0811  2-oxo acid dehydrogenases acyltransferase (catalytic domain) protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sru00010  Glycolysis / Gluconeogenesis
sru00053  Ascorbate and aldarate metabolism
sru00061  Fatty acid biosynthesis
sru00071  Fatty acid degradation
sru00190  Oxidative phosphorylation
sru00220  Arginine biosynthesis
sru00250  Alanine, aspartate and glutamate metabolism
sru00280  Valine, leucine and isoleucine degradation
sru00350  Tyrosine metabolism
sru00470  D-Amino acid metabolism
sru00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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