Entry
Name
ABC transporters - Shigella sonnei Ss046
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Shigella sonnei Ss046 [GN:
ssn ]
Gene
SSON_2513 cysU; sulfate, thiosulfate transport system permease T protein [KO:K02046 ]
SSON_2512 cysW; ABC-type sulfate transport system permease component [KO:K02047 ]
SSON_0712 modF; ATP-binding component of molybdate transport system [KO:K05776 ]
SSON_1141 potD; spermidine/putrescine periplasmic transport protein [KO:K11069 ]
SSON_1142 potC; spermidine/putrescine transport system permease [KO:K11070 ]
SSON_1143 potB; spermidine/putrescine transport system permease [KO:K11071 ]
SSON_2824 proX; high-affinity transport system for glycine betaine and proline [KO:K02002 ]
SSON_2823 proW; high-affinity transport system for glycine betaine and proline [KO:K02001 ]
SSON_2822 proV; ATP-binding component of transport system for glycine, betaine and proline [KO:K02000 ] [EC:7.6.2.9 ]
SSON_4213 malK; ATP-binding component of transport system for maltose [KO:K10111 ] [EC:7.5.2.-]
SSON_2630 yphE; putative ATP-binding component of a transport system [KO:K23547 ]
SSON_3343 yrbF; putative ATP-binding component of a transport system [KO:K02065 ]
SSON_1219 araH; ABC-type arabinose transport system, permease component [KO:K10538 ]
SSON_2204 mglC; methyl-galactoside transport and galactose taxis [KO:K10541 ]
SSON_2205 mglA; ATP-binding component of methyl-galactoside transport and galactose taxis [KO:K10542 ] [EC:7.5.2.11 ]
SSON_3690 ugpA; sn-glycerol 3-phosphate transport system integral membrane protein [KO:K05814 ]
SSON_3906 pstS; high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein [KO:K02040 ]
SSON_3907 pstC; high-affinity phosphate-specific transport system, cytoplasmic membrane component [KO:K02037 ]
SSON_3908 pstA; high-affinity phosphate-specific transport protein [KO:K02038 ]
SSON_3909 pstB; ATP-binding component of high-affinity phosphate-specific transport system [KO:K02036 ] [EC:7.3.2.1 ]
SSON_4280 phnD; periplasmic binding protein component of Pn transporter [KO:K02044 ]
SSON_4279 phnE; membrane channel protein component of Pn transporter [KO:K02042 ]
SSON_2368 argT; lysine-, arginine-, ornithine-binding periplasmic protein [KO:K10013 ]
SSON_2367 hisJ; histidine-binding periplasmic protein of high-affinity histidine transport system [KO:K10014 ]
SSON_0790 glnP; glutamine high-affinity transport system membrane component [KO:K10037 ]
SSON_0845 artJ; arginine 3rd transport system periplasmic binding protein [KO:K09996 ]
SSON_0848 artI; arginine 3rd transport system periplasmic binding protein [KO:K09997 ]
SSON_1200 yecS; putative transport system permease protein (former yecC) [KO:K10009 ]
SSON_3696 livK; high-affinity leucine-specific transport system; periplasmic binding protein [KO:K01999 ]
SSON_3698 livJ; high-affinity amino acid transport system; periplasmic binding protein [KO:K01999 ]
SSON_3695 livH; high-affinity branched-chain amino acid transport system; membrane component [KO:K01997 ]
SSON_3694 livM; high-affinity branched-chain amino acid transport [KO:K01998 ]
SSON_3693 livG; ATP-binding component of high-affinity branched-chain amino acid transport system [KO:K01995 ]
SSON_1937 oppA; oligopeptide transport periplasmic binding protein [KO:K15580 ]
SSON_1935 oppC; oligopeptide transport permease protein-like protein [KO:K15582 ]
SSON_1934 oppD; ATP-binding protein of oligopeptide ABC transport system [KO:K15583 ]
SSON_1933 oppF; ATP-binding protein of oligopeptide ABC transport system [KO:K10823 ]
SSON_3849 dppD; putative ATP-binding component of dipeptide transport system [KO:K12371 ]
SSON_3850 dppF; putative ATP-binding component of dipeptide transport system [KO:K12372 ]
SSON_1846 sapA; peptide transport periplasmic protein-like protein [KO:K19226 ]
SSON_1847 sapB; peptide transport permease protein-like protein [KO:K19227 ]
SSON_1848 sapC; peptide transport permease protein-like protein [KO:K19228 ]
SSON_1849 sapD; putative ATP-binding protein of peptide transport system [KO:K19229 ]
SSON_1850 sapF; putative ATP-binding protein of peptide transport system [KO:K19230 ]
SSON_2236 yejF; putative ATP-binding component of a transport system [KO:K13896 ]
SSON_4462 fecB; citrate-dependent iron transport, periplasmic protein [KO:K23181 ]
SSON_4460 fecD; citrate-dependent iron transport membrane-bound protein [KO:K23182 ]
SSON_4461 fecC; citrate-dependent iron(III) transport protein, cytosolic [KO:K23183 ]
SSON_0543 fepB; ferric enterobactin binding protein periplasmic component [KO:K23185 ]
SSON_0164 fhuD; hydroxamate-dependent iron uptake, cytoplasmic membrane component [KO:K23227 ]
SSON_0165 fhuB; hydroxamate-dependent iron uptake, cytoplasmic membrane component [KO:K23228 ]
SSON_1752 sitC; iron transport protein inner membrane component [KO:K11605 ]
SSON_1753 sitD; Iron transport protein inner membrane component [KO:K11606 ]
SSON_3083 putative ATP-binding protein of ABC transport system [KO:K16786 ] [EC:7.-.-.-]
SSON_3084 putative ATP-binding protein of ABC transport system [KO:K16787 ] [EC:7.-.-.-]
SSON_1137 ycfV; putative ATP-binding component of a transport system [KO:K09810 ] [EC:7.6.2.-]
SSON_2258 ccmB; heme exporter protein B, cytochrome c-type biogenesis protein [KO:K02194 ]
SSON_3701 ftsE; ATP-binding component of a membrane-associated complex involved in cell division [KO:K09812 ]
SSON_0437 mdlB; putative ATP-binding component of a transport system [KO:K18890 ]
SSON_0887 cydC; ATP-binding component of cytochrome-related transport [KO:K16012 ]
SSON_0888 cydD; ATP-binding component of cytochrome-related transport, Zn sensitive [KO:K16013 ]
SSON_0866 ybjZ; putative ATP-binding component of a transport system [KO:K05685 ] [EC:7.6.2.-]
SSON_2269 yojI; putative ATP-binding component of a transport system [KO:K06159 ]
SSON_1627 yddA; putative ATP-binding component of a transport system [KO:K02471 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
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