KEGG   PATHWAY: sth00020
Entry
sth00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Symbiobacterium thermophilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sth00020  Citrate cycle (TCA cycle)
sth00020

Module
sth_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sth00020]
sth_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sth00020]
sth_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sth00020]
sth_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sth00020]
Other DBs
GO: 0006099
Organism
Symbiobacterium thermophilum [GN:sth]
Gene
STH2542  citrate synthase [KO:K01647] [EC:2.3.3.1]
STH3164  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
STH2544  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STH1946  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
STH414  pyruvate dehydrogenase E3 [KO:K00382] [EC:1.8.1.4]
STH2163  branched-chain alpha-keto acid dehydrogenase E3 [KO:K00382] [EC:1.8.1.4]
STH1317  2-oxoacid:ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STH222  2-oxoglutarate oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STH1316  2-oxoacid:ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STH223  2-oxoglutarate oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STH224  2-oxoglutarate oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
STH221  putative ferredoxin [KO:K00176] [EC:1.2.7.3]
STH2532  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
STH2533  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
STH2639  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STH3175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STH2640  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
STH3174  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
STH2637  succinate dehydrogenase membrane subunit [KO:K00241]
STH3176  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
STH2638  succinate dehydrogenase membrane subunit [KO:K00242]
STH2536  fumarate hydratase subunit A [KO:K01677] [EC:4.2.1.2]
STH2641  fumarate hydratase subunit A [KO:K01677] [EC:4.2.1.2]
STH2535  fumarate hydratase subunit B [KO:K01678] [EC:4.2.1.2]
STH2642  fumarate hydratase subunit B [KO:K01678] [EC:4.2.1.2]
STH2543  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STH2182  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
STH411  pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
STH412  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
STH413  pyruvate dehydrogenase E2 [KO:K00627] [EC:2.3.1.12]
STH3262  pyruvate ferredoxin oxidoreductase alpha-beta subunit [KO:K00169] [EC:1.2.7.1]
STH3264  pyruvate ferredoxin oxidoreductase gamma-delta subunit [KO:K00172] [EC:1.2.7.1]
STH3167  pyruvate flavodoxin dehydrogenase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sth00010  Glycolysis / Gluconeogenesis
sth00053  Ascorbate and aldarate metabolism
sth00061  Fatty acid biosynthesis
sth00071  Fatty acid degradation
sth00190  Oxidative phosphorylation
sth00220  Arginine biosynthesis
sth00250  Alanine, aspartate and glutamate metabolism
sth00280  Valine, leucine and isoleucine degradation
sth00350  Tyrosine metabolism
sth00470  D-Amino acid metabolism
sth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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