KEGG   PATHWAY: sto00020
Entry
sto00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sulfurisphaera tokodaii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sto00020  Citrate cycle (TCA cycle)
sto00020

Module
sto_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sto00020]
sto_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sto00020]
sto_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sto00020]
sto_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sto00020]
sto_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sto00020]
Other DBs
GO: 0006099
Organism
Sulfurisphaera tokodaii [GN:sto]
Gene
STK_18050  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STK_05870  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STK_08330  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
STK_21660  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
STK_18650  lpdA; putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STK_06870  lpdA; putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STK_14870  lpdA; putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STK_18790  lpdA; putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STK_23000  2-oxoacid--ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STK_24350  2-oxoacid--ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STK_22980  2-oxoacid--ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STK_24330  2-oxoacid--ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STK_09620  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
STK_09630  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
STK_04970  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STK_04980  shdB; succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
STK_04990  sdhC; succinate dehydrogenase subunit SdhC [KO:K00241]
STK_05000  sdhD; succinate dehydrogenase subunit SdhD [KO:K18859]
STK_20230  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
STK_18110  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STK_10580  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
STK_17880  2-oxoacid--ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
STK_15330  2-oxoacid--ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
STK_17870  2-oxoacid--ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
STK_15310  2-oxoacid--ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
STK_17887  2-oxoacid--ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
STK_15315  2-oxoacid--ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
STK_17884  2-oxoacid--ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sto00010  Glycolysis / Gluconeogenesis
sto00061  Fatty acid biosynthesis
sto00071  Fatty acid degradation
sto00190  Oxidative phosphorylation
sto00220  Arginine biosynthesis
sto00250  Alanine, aspartate and glutamate metabolism
sto00280  Valine, leucine and isoleucine degradation
sto00350  Tyrosine metabolism
sto00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system