KEGG   PATHWAY: sug00020
Entry
sug00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus ST398 (MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sug00020  Citrate cycle (TCA cycle)
sug00020

Module
sug_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sug00020]
sug_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sug00020]
sug_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sug00020]
sug_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sug00020]
sug_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sug00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus ST398 (MRSA) [GN:sug]
Gene
SAPIG1749  citrate synthase 2 (Citrate synthase II) [KO:K01647] [EC:2.3.3.1]
SAPIG1352  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SAPIG1748  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SAPIG1415  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
SAPIG1414  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
SAPIG1093  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAPIG1584  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAPIG1291  pyruvate ferredoxin oxidoreductase alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAPIG1292  ferrodoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAPIG1246  sucD; succinate-CoA ligase, alpha subunit subfamily [KO:K01902] [EC:6.2.1.5]
SAPIG1245  succinyl-CoA synthetase beta chain (SCS-alpha)(Vegetative protein 63) (VEG63) [KO:K01903] [EC:6.2.1.5]
SAPIG1144  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAPIG1145  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SAPIG1143  succinate dehydrogenase cytochrome B558 subunit (Cytochrome b-558) [KO:K00241]
SAPIG1917  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SAPIG2655  mqo; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
SAPIG2418  mqo; malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
SAPIG1111  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAPIG1839  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SAPIG1090  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SAPIG1091  pyruvate dehydrogenase E1 component subunit beta (Scomplex, 36 kDa subunit) [KO:K00162] [EC:1.2.4.1]
SAPIG1092  dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex (E2) (Dihydrolipoamideacetyltransferase component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sug00010  Glycolysis / Gluconeogenesis
sug00053  Ascorbate and aldarate metabolism
sug00061  Fatty acid biosynthesis
sug00071  Fatty acid degradation
sug00190  Oxidative phosphorylation
sug00220  Arginine biosynthesis
sug00250  Alanine, aspartate and glutamate metabolism
sug00280  Valine, leucine and isoleucine degradation
sug00350  Tyrosine metabolism
sug00470  D-Amino acid metabolism
sug00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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