KEGG   PATHWAY: suz00020
Entry
suz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
suz00020  Citrate cycle (TCA cycle)
suz00020

Module
suz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:suz00020]
suz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:suz00020]
suz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:suz00020]
suz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:suz00020]
suz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:suz00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA) [GN:suz]
Gene
MS7_1702  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MS7_1308  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
MS7_1701  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MS7_1369  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
MS7_1368  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MS7_1053  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MS7_1536  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MS7_1247  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MS7_1248  acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MS7_1204  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MS7_1203  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MS7_1105  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MS7_1106  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
MS7_1104  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MS7_1856  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MS7_2612  malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
MS7_2383  malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
MS7_1071  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MS7_1790  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MS7_1050  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
MS7_1051  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MS7_1052  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
suz00010  Glycolysis / Gluconeogenesis
suz00053  Ascorbate and aldarate metabolism
suz00061  Fatty acid biosynthesis
suz00071  Fatty acid degradation
suz00190  Oxidative phosphorylation
suz00220  Arginine biosynthesis
suz00250  Alanine, aspartate and glutamate metabolism
suz00280  Valine, leucine and isoleucine degradation
suz00350  Tyrosine metabolism
suz00470  D-Amino acid metabolism
suz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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